Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11a03
         (856 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060228-1|AAL25267.1|  154|Drosophila melanogaster GH01635p pro...   162   6e-40
AE014297-829|AAF54298.1|  154|Drosophila melanogaster CG9836-PA ...   162   6e-40
AY070512-1|AAL47983.1|  471|Drosophila melanogaster GH14162p pro...    29   8.1  
AE014297-3798|AAF56466.1|  471|Drosophila melanogaster CG11910-P...    29   8.1  

>AY060228-1|AAL25267.1|  154|Drosophila melanogaster GH01635p
           protein.
          Length = 154

 Score =  162 bits (393), Expect = 6e-40
 Identities = 76/85 (89%), Positives = 83/85 (97%)
 Frame = -3

Query: 836 EVQIKVDENGKIVDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELSLPP 657
           ++QIKVDENGKIVDAKFKTFGCGSAIASSSLATEWVKGK++DEA KLKNTDIAKEL LPP
Sbjct: 65  KLQIKVDENGKIVDAKFKTFGCGSAIASSSLATEWVKGKSIDEAGKLKNTDIAKELRLPP 124

Query: 656 VKLHCSMLAEDAIKAALSDYRIKQQ 582
           VKLHCSMLAEDAIKAAL+DY++KQQ
Sbjct: 125 VKLHCSMLAEDAIKAALADYKVKQQ 149


>AE014297-829|AAF54298.1|  154|Drosophila melanogaster CG9836-PA
           protein.
          Length = 154

 Score =  162 bits (393), Expect = 6e-40
 Identities = 76/85 (89%), Positives = 83/85 (97%)
 Frame = -3

Query: 836 EVQIKVDENGKIVDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELSLPP 657
           ++QIKVDENGKIVDAKFKTFGCGSAIASSSLATEWVKGK++DEA KLKNTDIAKEL LPP
Sbjct: 65  KLQIKVDENGKIVDAKFKTFGCGSAIASSSLATEWVKGKSIDEAGKLKNTDIAKELRLPP 124

Query: 656 VKLHCSMLAEDAIKAALSDYRIKQQ 582
           VKLHCSMLAEDAIKAAL+DY++KQQ
Sbjct: 125 VKLHCSMLAEDAIKAALADYKVKQQ 149


>AY070512-1|AAL47983.1|  471|Drosophila melanogaster GH14162p
           protein.
          Length = 471

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 13  LIIGHEVIYPTTFLTYYNNSTFQILHLLTNIFLWL-LDKINNCKNRKNQKQSFQ 171
           +I+    I  TT LT+ N+S  +I HLL + F  L + ++ NC     +K  F+
Sbjct: 57  VILSQAPIGGTTMLTFLNSSIAKIPHLLFDTFPDLQVLRMENCSLETFEKPQFE 110


>AE014297-3798|AAF56466.1|  471|Drosophila melanogaster CG11910-PA
           protein.
          Length = 471

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 13  LIIGHEVIYPTTFLTYYNNSTFQILHLLTNIFLWL-LDKINNCKNRKNQKQSFQ 171
           +I+    I  TT LT+ N+S  +I HLL + F  L + ++ NC     +K  F+
Sbjct: 57  VILSQAPIGGTTMLTFLNSSIAKIPHLLFDTFPDLQVLRMENCSLETFEKPQFE 110


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,779,374
Number of Sequences: 53049
Number of extensions: 577597
Number of successful extensions: 1068
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4106450400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)