Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11a03
         (856 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-2|CAA16379.1|  153|Caenorhabditis elegans Hypothetical ...   142   4e-34
Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical p...    28   7.4  
Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein ...    28   7.4  
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo...    28   9.7  
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo...    28   9.7  
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo...    28   9.7  
AC006769-1|AAF60590.2|  287|Caenorhabditis elegans Hypothetical ...    28   9.7  

>AL021492-2|CAA16379.1|  153|Caenorhabditis elegans Hypothetical
           protein Y45F10D.4 protein.
          Length = 153

 Score =  142 bits (343), Expect = 4e-34
 Identities = 64/84 (76%), Positives = 77/84 (91%)
 Frame = -3

Query: 836 EVQIKVDENGKIVDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELSLPP 657
           ++QI+VD+NGKI++AKFKTFGCGSAIASSSLATEW+ GKT+D A K+KN +IAKEL LPP
Sbjct: 66  KLQIRVDDNGKIIEAKFKTFGCGSAIASSSLATEWINGKTIDYASKIKNDEIAKELCLPP 125

Query: 656 VKLHCSMLAEDAIKAALSDYRIKQ 585
           VKLHCSMLA+DAI+AAL DY+ KQ
Sbjct: 126 VKLHCSMLAQDAIQAALKDYQKKQ 149


>Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical
           protein F56H9.5 protein.
          Length = 1139

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
 Frame = +1

Query: 97  TNIFLWLLDKINNCKNRKNQKQS-------FQTIESQD*LDFILNCKHN*LFFIIVYHN* 255
           T I +  +DK+ NC N K QK S       F  I +Q   D ++   +N  +   V+ + 
Sbjct: 10  TKIVIEYIDKLRNCSNEKRQKVSSVIRPVDFPGISTQQLCDILIRFAYNGTYIDDVFRDH 69

Query: 256 LV 261
           L+
Sbjct: 70  LL 71


>Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical
           protein F56H9.5 protein.
          Length = 1139

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
 Frame = +1

Query: 97  TNIFLWLLDKINNCKNRKNQKQS-------FQTIESQD*LDFILNCKHN*LFFIIVYHN* 255
           T I +  +DK+ NC N K QK S       F  I +Q   D ++   +N  +   V+ + 
Sbjct: 10  TKIVIEYIDKLRNCSNEKRQKVSSVIRPVDFPGISTQQLCDILIRFAYNGTYIDDVFRDH 69

Query: 256 LV 261
           L+
Sbjct: 70  LL 71


>Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 728 KGKTVDEALKLKNTDIAKELSLPPVKLHCSMLAEDAIKAAL 606
           K KT+DE L+ +N + A  L++  ++   S   EDA+ A L
Sbjct: 83  KDKTIDEILEEENREKAHALAMRELRAGASDSDEDALMAQL 123


>Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 728 KGKTVDEALKLKNTDIAKELSLPPVKLHCSMLAEDAIKAAL 606
           K KT+DE L+ +N + A  L++  ++   S   EDA+ A L
Sbjct: 83  KDKTIDEILEEENREKAHALAMRELRAGASDSDEDALMAQL 123


>U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein
           protein.
          Length = 1139

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
 Frame = +1

Query: 97  TNIFLWLLDKINNCKNRKNQKQS-------FQTIESQD*LDFILNCKHN*LFFIIVYHN* 255
           T I +  +DK+ NC N K QK S       F  I +Q   D ++   +N  +   V+ + 
Sbjct: 10  TKIVIEYIDKLRNCSNEKRQKVSSVIRPVDFPGISTQQLCDILIRFAYNGTYIDDVFRDH 69

Query: 256 LV 261
           L+
Sbjct: 70  LL 71


>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
           metabolism enzyme-5 protein.
          Length = 2238

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 707 ALKLKNTDIAKELSLPPVKLHCSMLAEDAIK 615
           A+++ + D+A  L+  PVK+HC+ L    +K
Sbjct: 294 AVRMGHRDLASALAQGPVKMHCNDLHRATLK 324


>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
           metabolism enzymeprotein 5, isoform a protein.
          Length = 2276

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 707 ALKLKNTDIAKELSLPPVKLHCSMLAEDAIK 615
           A+++ + D+A  L+  PVK+HC+ L    +K
Sbjct: 294 AVRMGHRDLASALAQGPVKMHCNDLHRATLK 324


>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
           metabolism enzymeprotein 5, isoform b protein.
          Length = 2238

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 707 ALKLKNTDIAKELSLPPVKLHCSMLAEDAIK 615
           A+++ + D+A  L+  PVK+HC+ L    +K
Sbjct: 294 AVRMGHRDLASALAQGPVKMHCNDLHRATLK 324


>AC006769-1|AAF60590.2|  287|Caenorhabditis elegans Hypothetical
           protein Y45G12C.8 protein.
          Length = 287

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 45  YFFNILQQFDFSNFTLAN 98
           +FFNI+  + F+NFT AN
Sbjct: 224 FFFNIIPSYAFANFTSAN 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,340,621
Number of Sequences: 27780
Number of extensions: 334182
Number of successful extensions: 741
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)