Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11a02
(851 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 419 e-118
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 213 4e-56
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 211 1e-55
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 140 2e-34
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 30 0.48
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 1.1
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 28 1.9
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 27 4.5
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met... 26 5.9
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 26 5.9
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T... 26 5.9
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 7.8
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 26 7.8
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 26 7.8
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 419 bits (1031), Expect = e-118
Identities = 189/246 (76%), Positives = 221/246 (89%)
Frame = -2
Query: 829 EPYNATLSVHQLVENTDESYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 650
EPYNATLS+HQLVEN+DE++CIDNEAL I TLK+ +P+Y DLNHLVSA M+GVTT
Sbjct: 181 EPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSF 240
Query: 649 RFPGQLNADLRKLAVNMVPFPRLHFFIPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 470
RFPG+LN+DLRKLAVNMVPFPRLHFF+ GFAPL + GS ++A++VPELTQQMFDA NMM
Sbjct: 241 RFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMM 300
Query: 469 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPNNVKTAVCDIPPRG 290
A DPRHGRYLTVAA+FRG++SMKEVDEQ+ ++Q KNS+YFVEWIP+NV AVC +PP+
Sbjct: 301 VAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKD 360
Query: 289 LKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 110
LKMSATFIGNST+IQE+F+R+ +QF+AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 361 LKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 109 EYQQYQ 92
EYQQYQ
Sbjct: 421 EYQQYQ 426
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 213 bits (519), Expect = 4e-56
Identities = 92/252 (36%), Positives = 153/252 (60%), Gaps = 8/252 (3%)
Frame = -2
Query: 829 EPYNATLSVHQLVENTDESYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 650
EPYN+ L+ H ++N+D ++ +DNEA YDIC R L + PTY +LN L++ +S +T L
Sbjct: 187 EPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASL 246
Query: 649 RFPGQLNADLRKLAVNMVPFPRLHFFIPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 470
RF G LN DL + N+VP+PR+HF + ++P+ S + + +V E+T Q F+ N M
Sbjct: 247 RFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQM 306
Query: 469 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPNNVKTAVCDIPPR- 293
CDPR GRY+ ++RG + ++V + +I+++ + FV+W P K +C PP+
Sbjct: 307 VKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQH 366
Query: 292 -------GLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAE 134
+ + + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 367 VPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAR 426
Query: 133 SNMNDLVSEYQQ 98
++ L +Y++
Sbjct: 427 EDLAALERDYEE 438
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 211 bits (515), Expect = 1e-55
Identities = 93/252 (36%), Positives = 151/252 (59%), Gaps = 8/252 (3%)
Frame = -2
Query: 829 EPYNATLSVHQLVENTDESYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 650
EPYN+ L+ H ++ D ++ +DNE+ YDIC R L + P+Y +LN L++ +S +T L
Sbjct: 183 EPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITASL 242
Query: 649 RFPGQLNADLRKLAVNMVPFPRLHFFIPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 470
RF G LN DL + N+VP+PR+HF + +AP+ S + + +V E+T Q F+ N M
Sbjct: 243 RFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQM 302
Query: 469 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPNNVKTAVCDIPPRG 290
CDPR GRY+ ++RG + ++V + I+ K + FV+W P K +CD PP+
Sbjct: 303 VKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQH 362
Query: 289 LKMS--------ATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAE 134
++ S + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 363 IEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAR 422
Query: 133 SNMNDLVSEYQQ 98
++ L +Y++
Sbjct: 423 EDLAALERDYEE 434
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 140 bits (339), Expect = 2e-34
Identities = 74/253 (29%), Positives = 137/253 (54%), Gaps = 10/253 (3%)
Frame = -2
Query: 829 EPYNATLSVHQLVENTDESYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 650
+PYN+ L++ +L N D +DN AL I L PT+ N LVS MS TT L
Sbjct: 184 QPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTL 243
Query: 649 RFPGQLNADLRKLAVNMVPFPRLHFFIPGFAPLTSRGSQQYRAL---TVPELTQQMFDAK 479
R+PG +N DL + +++P PR HF + + P T++ ++ +A+ TV ++ +++ K
Sbjct: 244 RYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPK 303
Query: 478 NMMAACDP-RHGRYLTVAAVFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPNNVKTAVCDI 302
N M + +P + ++++ + +G +V + ++ I+ + + F+ W P +++ A+
Sbjct: 304 NQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKK 363
Query: 301 PP---RGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAES 131
P ++S + N T+I LFKR +Q+ + +R AFL Y E + E + E +S
Sbjct: 364 SPYIKTNHRVSGLMLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDS 423
Query: 130 NMN---DLVSEYQ 101
+ + DL++EY+
Sbjct: 424 SRDVVADLINEYE 436
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 29.9 bits (64), Expect = 0.48
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -2
Query: 424 VFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIG--NSTA 251
V+ + ++ + + +MNI+ N S W+PN + +P G K+S I N +
Sbjct: 343 VYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVSEMLISMLNICS 402
Query: 250 IQELFK 233
+EL++
Sbjct: 403 KEELYE 408
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.7 bits (61), Expect = 1.1
Identities = 25/87 (28%), Positives = 40/87 (45%)
Frame = +1
Query: 478 SSRQTSAASTPAPLAHGTADSRVTSEARNPV*KSATVGTAPCSLLACADLHSTDQGTVDK 657
S+ TSA+STP A+ T + V+S A P +++V P S ++ L S + T
Sbjct: 380 STSATSASSTPLTSANSTTSTSVSSTA--PSYNTSSV--LPTSSVSSTPLSSANSTTATS 435
Query: 658 SSRLTLSPKQDGSSRHKSGLLASACGS 738
+S LS ++ S S+ S
Sbjct: 436 ASSTPLSSVNSTTATSASSTPLSSVNS 462
Score = 27.1 bits (57), Expect = 3.4
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = +1
Query: 478 SSRQTSAASTPAPLAHGTADSRVTSEARNPV*KSATVGTAPCSLLACADLHSTDQGTVDK 657
S+ TSA+STP A+ T + V+S A P +++V P S ++ L S + T
Sbjct: 494 STSATSASSTPLTSANSTTSTSVSSTA--PSYNTSSV--LPTSSVSSTPLSSANSTTATS 549
Query: 658 SSRLTLS 678
+S L+
Sbjct: 550 ASSTPLT 556
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 262 NSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDE 155
NS+ IQ L K ++ T +R ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 697 LNHLVSATMSGVTTCLRFPGQLN 629
L HLV A + G++ C +PG+ N
Sbjct: 331 LTHLVDAPLLGMSVCPLYPGEEN 353
>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
Met11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 634 TDQGTVDKSSRLTLSPKQDGSSRHKSGLLASA 729
+ Q DKSS L ++ KQ S HK L A
Sbjct: 347 SQQPVADKSSNLFVTSKQSSVSGHKDNLTEEA 378
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -1
Query: 698 LEPSCFGDNVRRDDLSTVPWSVECRSAQASSEHGAVPTVALFH 570
LE F DN + +++S C + A+S H A AL H
Sbjct: 523 LETKKFSDNSQGEEISDNLHGESCNNPNANSVHSAQLLQALLH 565
>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 712 GLLASACGSRYHTEPRCQCSTIHLYFLPTDVLKGWH 819
G + S C S + EPR CST H F + K H
Sbjct: 262 GFVCSVCLSIF-CEPRVHCSTCHTKFTVEPMSKKLH 296
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.8 bits (54), Expect = 7.8
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -2
Query: 268 IGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 92
+ N + L+K + E+F+ +F RK L WY G+ E + N+N SE + Q
Sbjct: 1703 LNNPHLLFTLYKLL-ERFSLIFLRKCALLWYCRYGVS----FETQPNLNFQNSELSRLQ 1756
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -2
Query: 445 RYLTVAAVFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPN 329
+Y+ +VF G + NI N S EW+PN
Sbjct: 29 QYIPTISVFEGSLIDNRDTLSYFNISNLEPSERSEWLPN 67
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 25.8 bits (54), Expect = 7.8
Identities = 22/68 (32%), Positives = 31/68 (45%)
Frame = -2
Query: 799 QLVENTDESYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADL 620
Q+ NTD S N LY RT+ DLN S + GV +F G + +
Sbjct: 301 QVCTNTDSSRNAGNAILYQ-AVRTIL-------DLNSDSSLRVLGVNILAKFLGNRDNNT 352
Query: 619 RKLAVNMV 596
R +A+NM+
Sbjct: 353 RYVALNML 360
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,137,570
Number of Sequences: 5004
Number of extensions: 60877
Number of successful extensions: 215
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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