Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11a01
(809 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 49 9e-07
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 48 2e-06
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 40 6e-04
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 28 1.8
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 27 2.4
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 27 4.2
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac... 27 4.2
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi... 27 4.2
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 26 7.3
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 25 9.6
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 48.8 bits (111), Expect = 9e-07
Identities = 26/63 (41%), Positives = 34/63 (53%)
Frame = -2
Query: 739 DEEVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQA 560
D V + KIDAT ND S +SGFPTI + + P RY G R LED ++ + A
Sbjct: 405 DSNVVVAKIDATENDISVS---ISGFPTIMFFKANDKVNPVRYEGDRTLEDLSAFIDKHA 461
Query: 559 TSE 551
+ E
Sbjct: 462 SFE 464
Score = 31.1 bits (67), Expect = 0.19
Identities = 14/62 (22%), Positives = 33/62 (53%)
Frame = -2
Query: 730 VDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSE 551
+ ++++D T S++ + G+PT+ + K+ +Y+G R + +KY+ +Q
Sbjct: 73 ISLVEVDCTEEGDLCSEYSIRGYPTL--NVFKNGKQISQYSGPRKHDALVKYMRKQLLPT 130
Query: 550 LK 545
+K
Sbjct: 131 VK 132
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 48.0 bits (109), Expect = 2e-06
Identities = 22/63 (34%), Positives = 39/63 (61%)
Frame = -2
Query: 739 DEEVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQA 560
+ V+I+KI+A +V+ FPTI + PKD KP+ Y G R+LE I+Y+++++
Sbjct: 190 EPNVEIVKINADVFADIGRLHEVASFPTIKFFPKDDKDKPELYEGDRSLESLIEYINKKS 249
Query: 559 TSE 551
++
Sbjct: 250 GTQ 252
Score = 43.6 bits (98), Expect = 3e-05
Identities = 20/57 (35%), Positives = 35/57 (61%)
Frame = -2
Query: 733 EVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQ 563
+V I KIDA + ++ ++GFPT+ W P D S +P +Y+ R ++ ++VSE+
Sbjct: 73 DVLIGKIDADTHSDVADKYHITGFPTLIWFPPDGS-EPVQYSNARDVDSLTQFVSEK 128
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 39.5 bits (88), Expect = 6e-04
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = -2
Query: 730 VDIIKIDATANDWPKSQFDVSGFPTI---FWKPKDSSKKPQRYNGGRALEDFIKYVSEQA 560
V + DA N SQ+ V GFPTI + K SS YNG R+ + K+VS+
Sbjct: 83 VTAVDCDADQNRAVCSQYQVQGFPTIKLVYPSSKGSSLSSTDYNGDRSYKSLQKFVSDSI 142
Query: 559 TSELK 545
S++K
Sbjct: 143 PSKVK 147
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 324 ERQCLCTQRM-LFISAFPWTDITHINSEVIFHCFSHYIHP 440
E + +C + +F FP + +N +V+ HC SH P
Sbjct: 594 EHRAMCAFILSVFCRGFPQGQLACLNPQVLSHCLSHLNSP 633
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 278 SVNMMVNECNITIARGTTMSLYPKNAFHICFPLDRYNTH 394
+V + N N++ TT+S+ + IC P+D+ NTH
Sbjct: 543 TVKLEDNTVNLSFVNETTVSV---DKVVICIPMDKLNTH 578
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 26.6 bits (56), Expect = 4.2
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +3
Query: 360 ISAFPWTDITHINSEV-IFHCFSHYIHPSHKYT-RRSFMESF 479
IS +TD INS + F CF H + PS K T +F+E F
Sbjct: 780 ISRCSFTDF-EINSILNFFFCFLHTVEPSGKLTFELAFLEIF 820
>SPCC4G3.08 |psk1||serine/threonine protein kinase
Psk1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 436
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -3
Query: 321 LAIVMLHSLTIIFTDNRSRITLLDLQNNTDA*TQFHLSLLSVYGA 187
LA++ LH L I++ D + LLD + + T F LS ++ GA
Sbjct: 201 LALIHLHKLGIVYRDLKPENCLLDAEGHI-LLTDFGLSKVAENGA 244
>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +2
Query: 56 QLM*LIYHPQVE---VYQYTTYDNTSDFYKNV 142
Q+M ++ HP + Y YTT DN+ + Y N+
Sbjct: 75 QIMRIMKHPNIVDLIAYYYTTGDNSDEVYLNL 106
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 649 WKPKDSSKKPQRYNGGRALEDFIKYVSEQATSELKGWDRKG 527
W+ D + P++YN LE + KY AT+ L+G G
Sbjct: 112 WQ-SDHKRLPEKYNQMVCLEAYRKYPPVCATAGLRGIQNLG 151
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 25.4 bits (53), Expect = 9.6
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -2
Query: 676 DVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSELK 545
+VS FP I + + SSK P++ + LE IK+VS + ++
Sbjct: 465 NVSDFPQIVEQEELSSKNPRKVHFSDTLE--IKHVSRSGKANIE 506
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,439,256
Number of Sequences: 5004
Number of extensions: 74550
Number of successful extensions: 230
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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