Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11a01
(809 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0410 - 3234455-3234466,3234851-3234950,3235037-3235161,323... 50 2e-06
11_01_0618 - 4941906-4942118,4942231-4942343,4942534-4942651,494... 49 4e-06
01_03_0161 + 13337265-13337297,13337880-13338017,13338211-133383... 48 1e-05
04_03_1011 - 21708503-21708544,21708689-21708898,21709000-217091... 44 1e-04
02_04_0214 - 20976977-20977171,20977499-20977611,20978041-209781... 40 0.002
02_01_0001 - 3864-4049,4861-4917,5514-5648,5710-5808,5884-5952,6... 40 0.003
06_01_0452 + 3198475-3198962,3199062-3199191,3199332-3199497,319... 34 0.12
03_02_0810 + 11429776-11429985,11430003-11430935 34 0.15
07_03_1473 + 26756338-26757583,26759067-26759472,26760867-267609... 33 0.20
11_04_0032 + 12545208-12545954 32 0.62
08_02_0206 + 14286721-14287239,14291236-14291466,14291557-14292030 31 1.4
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 30 1.9
02_02_0554 - 11434744-11435364,11435741-11436442 30 1.9
11_04_0046 + 12751830-12752285,12752385-12752670,12753329-12753786 29 3.3
09_04_0345 + 16876489-16876614,16876718-16876876,16877989-168781... 29 3.3
08_02_0360 + 16196712-16197560,16198126-16198875 29 3.3
08_02_0118 + 12772636-12772910,12773151-12773254,12774097-127744... 29 3.3
04_01_0251 - 3294223-3294272,3295189-3295264,3295789-3296052,329... 29 3.3
03_05_0310 + 23008915-23009841,23010401-23011162 29 3.3
05_05_0168 + 22875488-22876072 29 4.4
11_06_0121 - 20330511-20330707,20332250-20332343 29 5.8
10_07_0030 - 12044953-12045524,12045567-12045876 29 5.8
11_04_0010 - 12139533-12139571,12140893-12141230,12141235-12141721 28 7.6
04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,900... 28 7.6
03_02_0811 + 11437654-11438958 28 7.6
03_02_0809 + 11419318-11420493 28 7.6
01_05_0573 + 23359968-23361044,23361112-23361255,23361458-23361841 28 7.6
>05_01_0410 -
3234455-3234466,3234851-3234950,3235037-3235161,
3235244-3235400,3235644-3235735,3235828-3235855,
3235949-3236066,3236411-3236466,3236556-3236653,
3236864-3236948,3237428-3237600
Length = 347
Score = 50.4 bits (115), Expect = 2e-06
Identities = 24/59 (40%), Positives = 39/59 (66%)
Frame = -2
Query: 739 DEEVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQ 563
DE V I +DA + ++ VSGFPT+ + PK +K + Y+GGR L+DF+K+++E+
Sbjct: 198 DEGVVIANLDADKHTALAEKYGVSGFPTLKFFPK-GNKAGEDYDGGRELDDFVKFINEK 255
Score = 48.4 bits (110), Expect = 7e-06
Identities = 24/64 (37%), Positives = 38/64 (59%)
Frame = -2
Query: 736 EEVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQAT 557
+ V I K+D + S++ VSG+PTI W PK S +P++Y G R E +YV+ +A
Sbjct: 80 KSVLIAKVDCDEHKSVCSKYGVSGYPTIQWFPK-GSLEPKKYEGQRTAEALAEYVNSEAA 138
Query: 556 SELK 545
+ +K
Sbjct: 139 TNVK 142
>11_01_0618 -
4941906-4942118,4942231-4942343,4942534-4942651,
4942762-4942881,4942964-4943101,4943392-4943517,
4943659-4943847,4943951-4944238,4944344-4944374,
4945014-4945216
Length = 512
Score = 49.2 bits (112), Expect = 4e-06
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = -2
Query: 739 DEEVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYV--SE 566
D++V I K+DATAND P S+FDV G+PT+++ P Y GR ++ + ++ ++
Sbjct: 434 DKDVVIAKMDATANDVP-SEFDVQGYPTLYFVTPSGKMVP--YESGRTADEIVDFIKKNK 490
Query: 565 QATSELKGWDRKGNAKQGKEEL 500
+ + K A+ K+EL
Sbjct: 491 ETAGQAKEKAESAPAEPLKDEL 512
>01_03_0161 +
13337265-13337297,13337880-13338017,13338211-13338308,
13338395-13338450,13338664-13338781,13338889-13338916,
13339021-13339112,13339321-13339477,13339569-13339693,
13339785-13339884,13339991-13340059
Length = 337
Score = 47.6 bits (108), Expect = 1e-05
Identities = 22/59 (37%), Positives = 39/59 (66%)
Frame = -2
Query: 739 DEEVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQ 563
D+ V I +DA + ++ VSG+PT+ + PK +K + Y+GGR L+DF+K+++E+
Sbjct: 169 DDGVVIANLDADKHKDLAEKYGVSGYPTLKFFPK-GNKAGEDYDGGRELDDFVKFINEK 226
Score = 44.8 bits (101), Expect = 8e-05
Identities = 22/64 (34%), Positives = 38/64 (59%)
Frame = -2
Query: 736 EEVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQAT 557
+ V I K+D + S++ VSG+PTI W PK S +P++Y G R+ E ++V+ +
Sbjct: 51 KSVFIAKVDCDEHKSVCSKYGVSGYPTIQWFPK-GSLEPKKYEGQRSAEALAEFVNTEGG 109
Query: 556 SELK 545
+ +K
Sbjct: 110 TNVK 113
>04_03_1011 -
21708503-21708544,21708689-21708898,21709000-21709112,
21709232-21709349,21709386-21709412,21709671-21709808,
21710069-21710194,21710279-21710467,21710598-21710885,
21710937-21711024,21711120-21711298
Length = 505
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/58 (37%), Positives = 35/58 (60%)
Frame = -2
Query: 739 DEEVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSE 566
D+++ I K+D T ND P + F V G+PTI++ SS Y+G R E+ I +++E
Sbjct: 414 DQDIVIAKMDGTVNDIP-TDFTVEGYPTIYF--YSSSGNLLSYDGARTAEEIISFINE 468
>02_04_0214 -
20976977-20977171,20977499-20977611,20978041-20978158,
20978585-20978701,20978836-20978973,20979193-20979318,
20979827-20980015,20980539-20980863,20980977-20981134
Length = 492
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = -2
Query: 739 DEEVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQA 560
DE+V I K+D TAND P S F V G+P++++ + P Y+ GR E+ I ++++
Sbjct: 420 DEDVVIAKMDGTANDVP-SDFAVEGYPSMYFYSSGGNLLP--YD-GRTAEEIIDFITKNK 475
Query: 559 TS 554
S
Sbjct: 476 GS 477
>02_01_0001 -
3864-4049,4861-4917,5514-5648,5710-5808,5884-5952,
6419-6493,6619-6705,6873-6953,7021-7163,7262-7430,
7538-7667,7753-8255
Length = 577
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = -2
Query: 724 IIKIDATANDWPKSQFDVSGFPTIFWKPK-DSSKKPQRYNGGRALEDFIKYVSEQATSEL 548
I K+D TAN+ P+++ D GFPTI + P S +P + G R + + K++ + A+
Sbjct: 483 IAKMDGTANEHPRAKPD--GFPTILFYPAGKKSFEPITFEGDRTVVEMYKFIKKHASIPF 540
Query: 547 K 545
K
Sbjct: 541 K 541
Score = 36.7 bits (81), Expect = 0.022
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = -2
Query: 733 EVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQ 563
+V + K+DAT + ++DV GFPTI + P+ YNG R E + +V+++
Sbjct: 125 QVALAKVDATEDTDLAQKYDVQGFPTILF---FIDGVPKDYNGARTKEAIVSWVNKK 178
>06_01_0452 +
3198475-3198962,3199062-3199191,3199332-3199497,
3199765-3199883,3200056-3200136,3200236-3200322,
3200644-3200715,3200791-3200859,3201349-3201426,
3201540-3201680,3202333-3202386,3202465-3202581
Length = 533
Score = 34.3 bits (75), Expect = 0.12
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -2
Query: 718 KIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQ 563
+IDA+ N+ PK Q ++ +PT+ P P + + L+D K+V E+
Sbjct: 465 RIDASVNEHPKLQ--INNYPTLLLYPAQDKSNPIKLSKKSNLKDMAKFVKEK 514
>03_02_0810 + 11429776-11429985,11430003-11430935
Length = 380
Score = 33.9 bits (74), Expect = 0.15
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 443 TQIHTQIFHGKF*ITTARLQLFLSLFGVTLSVPALKFACGLFRN 574
T ++T ++ K +TT +++ FG SVP + F CGLF N
Sbjct: 111 TCVYTYYYNDKS-VTTGLIEVDKFTFGAGASVPGVAFGCGLFNN 153
>07_03_1473 +
26756338-26757583,26759067-26759472,26760867-26760930,
26760975-26761055,26763350-26763588,26763689-26763947,
26764359-26764538,26764937-26765092,26765174-26765350
Length = 935
Score = 33.5 bits (73), Expect = 0.20
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = -2
Query: 661 PTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSELKGWDRKGNAKQGKEE 503
P + + P++ K + NG ++ + SE+A+S L + KG+ QGKEE
Sbjct: 313 PALLYLPRNG--KHVKINGNLVIKSIV--ASEKASSRLSNYGEKGSGNQGKEE 361
>11_04_0032 + 12545208-12545954
Length = 248
Score = 31.9 bits (69), Expect = 0.62
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -3
Query: 705 LQMTGPNHNSTFPASPQSSGSLRTAPRNLRDIMEDVL*RTSSSMFLNKPQANLRAGTERV 526
LQ G HN P PQ+SG T+ + +++I++ + S P A T
Sbjct: 19 LQELGAQHNIATPYHPQTSGQAETSNKQIKNILQKTVDEMGKSWKNKLPDALWAYRTAYK 78
Query: 525 TP 520
TP
Sbjct: 79 TP 80
>08_02_0206 + 14286721-14287239,14291236-14291466,14291557-14292030
Length = 407
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -3
Query: 705 LQMTGPNHNSTFPASPQSSGSLRTAPRNLRDIME 604
L+ G HN P PQ+SG T+ +++++IM+
Sbjct: 91 LREMGAKHNVATPYHPQTSGQAETSNKHIKNIMQ 124
>04_01_0312 +
4206400-4206627,4206661-4207269,4207425-4207902,
4208006-4208297,4209278-4209569,4210013-4210465
Length = 783
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -3
Query: 705 LQMTGPNHNSTFPASPQSSGSLRTAPRNLRDIMEDVL 595
L+ G HN P PQ+SG T+ + +++I++ ++
Sbjct: 682 LREMGAKHNVATPYHPQTSGQAETSNKQIKNILQKIV 718
>02_02_0554 - 11434744-11435364,11435741-11436442
Length = 440
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 705 LQMTGPNHNSTFPASPQSSGSLRTAPRNLRDIME 604
LQ G HN P PQ+SG T+ + +++I++
Sbjct: 46 LQDMGAKHNVATPYHPQTSGQAETSNKQIKNILQ 79
>11_04_0046 + 12751830-12752285,12752385-12752670,12753329-12753786
Length = 399
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 705 LQMTGPNHNSTFPASPQSSGSLRTAPRNLRDIMEDVL 595
L+ G HN P PQ+SG T+ + +++I++ +
Sbjct: 117 LREMGAKHNVATPYHPQTSGQAETSNKQIKNILQKTI 153
>09_04_0345 +
16876489-16876614,16876718-16876876,16877989-16878102,
16878701-16878882,16879142-16879241,16879597-16879638,
16879818-16879994,16880084-16880175,16880633-16880779,
16880832-16881036
Length = 447
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = -2
Query: 724 IIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSELK 545
+ +DA A+ ++ + GFPTI K K P Y G R ++ +++ Q + L+
Sbjct: 82 VAALDADAHKELAQEYGIRGFPTI--KVFVPGKPPVDYQGARDVKPIVEFALSQVKALLR 139
>08_02_0360 + 16196712-16197560,16198126-16198875
Length = 532
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 705 LQMTGPNHNSTFPASPQSSGSLRTAPRNLRDIME 604
L+ G HN P PQ+SG T + +++IM+
Sbjct: 91 LREMGAKHNVATPYHPQTSGQAETLNKQIKNIMQ 124
>08_02_0118 +
12772636-12772910,12773151-12773254,12774097-12774487,
12774795-12774870,12775030-12775047
Length = 287
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -3
Query: 705 LQMTGPNHNSTFPASPQSSGSLRTAPRNLRDIMEDVL*RTSSSMFLNKPQANLRAGTERV 526
L+ G HN P PQ+SG T+ + +++I++ + + + P A T
Sbjct: 19 LREMGAKHNVATPYHPQTSGQAETSNKQIKNILQKTVNKMGTGWKDRLPDALWAYRTAYK 78
Query: 525 TP 520
TP
Sbjct: 79 TP 80
>04_01_0251 -
3294223-3294272,3295189-3295264,3295789-3296052,
3296278-3296531,3296826-3296929,3297204-3297679
Length = 407
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 705 LQMTGPNHNSTFPASPQSSGSLRTAPRNLRDIME 604
LQ G HN P PQ+SG T+ + +++I++
Sbjct: 117 LQDMGAKHNVATPYYPQTSGQAETSNKQMKNIVQ 150
>03_05_0310 + 23008915-23009841,23010401-23011162
Length = 562
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -3
Query: 705 LQMTGPNHNSTFPASPQSSGSLRTAPRNLRDIMEDVL*RTSSSMFLNKPQANLRAGTERV 526
L+ G HN P PQ+SG T+ + +++I++ + + + P A T
Sbjct: 117 LREMGAKHNVATPYHPQTSGQAETSNKQIKNILQKTVNKMGTGWKDRLPDALWAYRTAYK 176
Query: 525 TP 520
TP
Sbjct: 177 TP 178
>05_05_0168 + 22875488-22876072
Length = 194
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 673 VSGFPTIFWKPKDSSKKPQRYNGGRALED 587
+ G P ++P+DSS P GG ++D
Sbjct: 93 IGGLPVTLYRPRDSSSPPAGKGGGGGVDD 121
>11_06_0121 - 20330511-20330707,20332250-20332343
Length = 96
Score = 28.7 bits (61), Expect = 5.8
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +3
Query: 432 IHPSHKYTRR-SFMESFESQQHAYNSSFPCLALPFLSQPLSSLVACSETYLMKSSRARPP 608
+H ++TRR F+++ A +S +ALP+ + L++ + S T R++PP
Sbjct: 10 LHLFGQHTRRMEFIDNEMPSGTAMPTSVEGVALPWPHESLTTPIDTSNTASSLEPRSKPP 69
Query: 609 LYL*GFL-ELSLGFQKIVGKPETS 677
Y G L + +G VG +S
Sbjct: 70 NYAMGVLNDGCIGVHDSVGVASSS 93
>10_07_0030 - 12044953-12045524,12045567-12045876
Length = 293
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 693 GPNHNSTFPASPQSSGSLRTAPRNLRDIME 604
G HN P PQ+SG T+ + +++I++
Sbjct: 106 GAKHNMAVPYHPQTSGRAETSNKQIKNILQ 135
>11_04_0010 - 12139533-12139571,12140893-12141230,12141235-12141721
Length = 287
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 705 LQMTGPNHNSTFPASPQSSGSLRTAPRNLRDIME 604
LQ G HN P PQ+SG + + +++I++
Sbjct: 91 LQELGAQHNIAAPYHPQTSGQAEMSNKQIKNILQ 124
>04_02_0034 -
8999618-9000358,9001439-9001618,9001666-9003621,
9004647-9004786,9004871-9005282,9006399-9006638
Length = 1222
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 705 LQMTGPNHNSTFPASPQSSGSLRTAPRNLRDIME 604
L+ G HN P PQ+SG T+ + +++I++
Sbjct: 146 LRDMGAKHNVATPYYPQTSGQAETSNKQIKNILQ 179
>03_02_0811 + 11437654-11438958
Length = 434
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 443 TQIHTQIFHGKF*ITTARLQLFLSLF-GVTLSVPALKFACGLFRN 574
T ++T + K +TT L++ F G SVP + F CGLF N
Sbjct: 160 TCVYTYSYGDKS-VTTGFLEVDKFTFVGAGASVPGVAFGCGLFNN 203
>03_02_0809 + 11419318-11420493
Length = 391
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 443 TQIHTQIFHGKF*ITTARLQLFLSLF-GVTLSVPALKFACGLFRN 574
T ++T + K +TT L++ F G SVP + F CGLF N
Sbjct: 113 TCVYTYSYGDKS-VTTGFLEVDKFTFVGAGASVPGVAFGCGLFNN 156
>01_05_0573 + 23359968-23361044,23361112-23361255,23361458-23361841
Length = 534
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = +2
Query: 257 KVILDLLSVNMMVNECNITIARGTTM----SLYPKNAFHICF--PLDRY 385
K++ L SV M +CNIT+ GT S ++AF P DRY
Sbjct: 485 KLVKPLSSVKMASGDCNITVVEGTVHDEEDSCCLRDAFDFSIDDPFDRY 533
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,241,386
Number of Sequences: 37544
Number of extensions: 439454
Number of successful extensions: 1072
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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