Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11a01
(809 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92970-1|CAB07480.1| 488|Caenorhabditis elegans Hypothetical pr... 85 4e-17
AB072567-1|BAB88817.1| 488|Caenorhabditis elegans ceERp57 protein. 85 4e-17
L15188-9|AAM22024.1| 618|Caenorhabditis elegans Hypothetical pr... 56 3e-08
Z37139-1|CAA85491.1| 485|Caenorhabditis elegans Hypothetical pr... 46 4e-05
U95074-1|AAB94647.1| 485|Caenorhabditis elegans protein disulph... 46 4e-05
U41542-8|AAN39682.1| 437|Caenorhabditis elegans Protein disulfi... 39 0.004
U41542-7|ABO16445.1| 371|Caenorhabditis elegans Protein disulfi... 39 0.004
U41542-6|AAK39152.1| 493|Caenorhabditis elegans Protein disulfi... 39 0.004
Z98866-5|CAB11548.1| 436|Caenorhabditis elegans Hypothetical pr... 39 0.005
U40411-4|AAC47065.1| 440|Caenorhabditis elegans Temporarily ass... 38 0.009
Z77657-7|CAH60768.1| 320|Caenorhabditis elegans Hypothetical pr... 31 0.98
AF250045-1|AAG17620.1| 246|Caenorhabditis elegans thioredoxin-l... 31 0.98
AF125955-2|AAD14719.1| 246|Caenorhabditis elegans Dumpy : short... 31 0.98
AL117205-5|CAB55163.1| 456|Caenorhabditis elegans Hypothetical ... 28 6.9
U88314-9|AAF99881.1| 408|Caenorhabditis elegans Hypothetical pr... 28 9.1
AF039053-5|AAC25875.2| 293|Caenorhabditis elegans Serpentine re... 28 9.1
AF016420-1|AAB65307.2| 310|Caenorhabditis elegans Serpentine re... 28 9.1
>Z92970-1|CAB07480.1| 488|Caenorhabditis elegans Hypothetical
protein H06O01.1 protein.
Length = 488
Score = 85.4 bits (202), Expect = 4e-17
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = -2
Query: 736 EEVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQAT 557
E+V I K+DATAND P F+V GFPT+FW PK++ P YNGGR ++DF+ ++S+ +T
Sbjct: 412 EDVIIAKMDATANDVPP-MFEVRGFPTLFWLPKNAKSNPIPYNGGREVKDFVSFISKHST 470
Query: 556 SELKGWDRKGNAKQGKE 506
LKG+ R G K+ E
Sbjct: 471 DGLKGFSRDGKKKKKTE 487
Score = 33.1 bits (72), Expect = 0.24
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = -2
Query: 739 DEEVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQA 560
D V ++K+D T +F V GFPT+ K + Q Y+G R + +K++ Q+
Sbjct: 70 DPPVALVKVDCTTEKTVCDKFGVKGFPTL--KIFRNGVPAQDYDGPRDADGIVKFMRGQS 127
>AB072567-1|BAB88817.1| 488|Caenorhabditis elegans ceERp57 protein.
Length = 488
Score = 85.4 bits (202), Expect = 4e-17
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = -2
Query: 736 EEVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQAT 557
E+V I K+DATAND P F+V GFPT+FW PK++ P YNGGR ++DF+ ++S+ +T
Sbjct: 412 EDVIIAKMDATANDVPP-MFEVRGFPTLFWLPKNAKSNPIPYNGGREVKDFVSFISKHST 470
Query: 556 SELKGWDRKGNAKQGKE 506
LKG+ R G K+ E
Sbjct: 471 DGLKGFSRDGKKKKKTE 487
Score = 33.1 bits (72), Expect = 0.24
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = -2
Query: 739 DEEVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQA 560
D V ++K+D T +F V GFPT+ K + Q Y+G R + +K++ Q+
Sbjct: 70 DPPVALVKVDCTTEKTVCDKFGVKGFPTL--KIFRNGVPAQDYDGPRDADGIVKFMRGQS 127
>L15188-9|AAM22024.1| 618|Caenorhabditis elegans Hypothetical
protein C14B9.2 protein.
Length = 618
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/65 (41%), Positives = 39/65 (60%)
Frame = -2
Query: 730 VDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSE 551
V + K+DAT ND P SQF V GFPTI++ P +P +Y+G R LED K++++
Sbjct: 553 VVLAKMDATINDAP-SQFAVEGFPTIYFAPAGKKSEPIKYSGNRDLEDLKKFMTKHGVKS 611
Query: 550 LKGWD 536
+ D
Sbjct: 612 FQKKD 616
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -2
Query: 730 VDIIKIDATANDWPKSQFDVSGFPTI-FWKPKDSSKKPQRYNGGRALEDFIKYVSEQATS 554
+ + K+DAT +F++ G+PT+ FWK K P Y+GGR +++V +
Sbjct: 84 IPLAKVDATVETELGKRFEIQGYPTLKFWK---DGKGPNDYDGGRDEAGIVEWVESRVDP 140
Query: 553 ELK 545
K
Sbjct: 141 NYK 143
Score = 31.1 bits (67), Expect = 0.98
Identities = 20/63 (31%), Positives = 35/63 (55%)
Frame = -2
Query: 733 EVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQATS 554
+V + K+DAT +++ VSG+PT+ K + ++ YNG R IKY+++Q+
Sbjct: 199 KVKLGKVDATIEKDLGTKYGVSGYPTM--KIIRNGRRFD-YNGPREAAGIIKYMTDQSKP 255
Query: 553 ELK 545
K
Sbjct: 256 AAK 258
>Z37139-1|CAA85491.1| 485|Caenorhabditis elegans Hypothetical
protein C14B1.1 protein.
Length = 485
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/58 (36%), Positives = 35/58 (60%)
Frame = -2
Query: 733 EVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQA 560
++ + K+DAT N S+F+V G+PTI + S KP +Y GGRA + +V +++
Sbjct: 75 DIKLAKVDATENQALASKFEVRGYPTILY---FKSGKPTKYTGGRATAQIVDWVKKKS 129
>U95074-1|AAB94647.1| 485|Caenorhabditis elegans protein disulphide
isomerase isoformI protein.
Length = 485
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/58 (36%), Positives = 35/58 (60%)
Frame = -2
Query: 733 EVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQA 560
++ + K+DAT N S+F+V G+PTI + S KP +Y GGRA + +V +++
Sbjct: 75 DIKLAKVDATENQALASKFEVRGYPTILY---FKSGKPTKYTGGRATAQIVDWVKKKS 129
>U41542-8|AAN39682.1| 437|Caenorhabditis elegans Protein disulfide
isomerase protein2, isoform b protein.
Length = 437
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = -2
Query: 733 EVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQ 563
++ + K+DAT + S+F+V G+PT+ + KPQ YNGGR + I ++ ++
Sbjct: 75 DIKLGKLDATVHGEVSSKFEVRGYPTL---KLFRNGKPQEYNGGRDHDSIIAWLKKK 128
>U41542-7|ABO16445.1| 371|Caenorhabditis elegans Protein disulfide
isomerase protein2, isoform c protein.
Length = 371
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = -2
Query: 733 EVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQ 563
++ + K+DAT + S+F+V G+PT+ + KPQ YNGGR + I ++ ++
Sbjct: 75 DIKLGKLDATVHGEVSSKFEVRGYPTL---KLFRNGKPQEYNGGRDHDSIIAWLKKK 128
>U41542-6|AAK39152.1| 493|Caenorhabditis elegans Protein disulfide
isomerase protein2, isoform a protein.
Length = 493
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = -2
Query: 733 EVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQ 563
++ + K+DAT + S+F+V G+PT+ + KPQ YNGGR + I ++ ++
Sbjct: 75 DIKLGKLDATVHGEVSSKFEVRGYPTL---KLFRNGKPQEYNGGRDHDSIIAWLKKK 128
>Z98866-5|CAB11548.1| 436|Caenorhabditis elegans Hypothetical
protein Y49E10.4 protein.
Length = 436
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -2
Query: 715 IDATANDWPKSQFDVSGFPTI-FWKPKDSS-KKPQRYNGGRALEDFIKYVSEQ 563
+DATA++ +F + GFPTI F+ P SS + Y GGR D I Y +
Sbjct: 210 LDATAHESIAQKFGIRGFPTIKFFAPGTSSASDAEDYQGGRTSTDLISYAESK 262
Score = 31.9 bits (69), Expect = 0.56
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = -2
Query: 727 DIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGR---ALEDFIKYVSEQAT 557
+I IDAT + ++ + G+PTI KP YNG R + D +K E++
Sbjct: 76 EIGAIDATVHQKIPLKYSIKGYPTIKIFGATEKSKPIDYNGPRTAKGIADAVKKSIEKSL 135
Query: 556 SE-LKGWDRKGNAKQGKE 506
+ LKG + + K K+
Sbjct: 136 EQRLKGKSSEKSKKSDKK 153
>U40411-4|AAC47065.1| 440|Caenorhabditis elegans Temporarily
assigned gene nameprotein 320 protein.
Length = 440
Score = 37.9 bits (84), Expect = 0.009
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -2
Query: 715 IDATANDWPKSQFDVSGFPTI-FWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSEL 548
+DAT + ++F + GFPTI ++ P Q Y+GGR D + + S +A +
Sbjct: 220 LDATVHTVVANKFAIRGFPTIKYFAPGSDVSDAQDYDGGRQSSDIVAWASARAQENM 276
>Z77657-7|CAH60768.1| 320|Caenorhabditis elegans Hypothetical
protein F08H9.12 protein.
Length = 320
Score = 31.1 bits (67), Expect = 0.98
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 2/122 (1%)
Frame = +2
Query: 68 LIYHPQVEVYQYTTYDNTSD-FYKNVYYFLTKRSKML-SYICAPYTESNER*NCVYASVL 241
LIY P + V + ++ ++ Y + Y F M + PY SN NC S+L
Sbjct: 199 LIYIPVMIVTRKNSHQHSQQHIYLHEYVFFQSCLVMFFKLVTLPYFLSNLEYNCASTSML 258
Query: 242 FCKSSKVILDLLSVNMMVNECNITIARGTTMSLYPKNAFHICFPLDRYNTHKLRSHISLF 421
+ V+ L + + +CNI S + F + F + H S I+
Sbjct: 259 SMSLADVVTTPLIIQLSYLKCNIHDVICLFFSFDIQKYFRVVFGNVENSVHPNLSRIAFS 318
Query: 422 FT 427
T
Sbjct: 319 IT 320
>AF250045-1|AAG17620.1| 246|Caenorhabditis elegans thioredoxin-like
protein DPY-11 protein.
Length = 246
Score = 31.1 bits (67), Expect = 0.98
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = -2
Query: 739 DEEVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQ 563
D + + ++D T N +F V+ PTI+ KD + +Y+G R DFI +V ++
Sbjct: 70 DLGIKVGEVDVTVNPGLSGRFLVTALPTIY-HVKDGVFR--QYSGARDKNDFISFVEDK 125
>AF125955-2|AAD14719.1| 246|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 11 protein.
Length = 246
Score = 31.1 bits (67), Expect = 0.98
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = -2
Query: 739 DEEVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQ 563
D + + ++D T N +F V+ PTI+ KD + +Y+G R DFI +V ++
Sbjct: 70 DLGIKVGEVDVTVNPGLSGRFLVTALPTIY-HVKDGVFR--QYSGARDKNDFISFVEDK 125
>AL117205-5|CAB55163.1| 456|Caenorhabditis elegans Hypothetical
protein Y116A8A.6 protein.
Length = 456
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = -3
Query: 726 TSLRSMQLQMTGPNHNSTFPASPQSSGSLRTAPRNLRD-IMEDVL*RTSSSMFLNKPQAN 550
TSL + +Q + + S+ PA+ L+ + + + +++ RT+SS +KP+
Sbjct: 309 TSLETTIMQASSASPISSKPATTTEPSPLQASSKPATEPLLQPESARTASSSASSKPEVQ 368
Query: 549 LRAGTERVTPNKERKSCRRAVVI 481
TE TP+ S + + +
Sbjct: 369 TTIPTEIQTPSLRTSSLKTSTTV 391
>U88314-9|AAF99881.1| 408|Caenorhabditis elegans Hypothetical
protein C46H11.2 protein.
Length = 408
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 402 EVIFHCFSHYIHPSHKYTRRSFMESFESQQHAYNSS 509
+++F C HY P++ Y +F SF H Y S
Sbjct: 131 DIVFVCNGHYFAPNNPYEESAFEGSF-IHSHDYRHS 165
>AF039053-5|AAC25875.2| 293|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 23 protein.
Length = 293
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = +1
Query: 307 HYYCKRNDNVSVPKECFSYLLSLGQI*HT*TQKSYFIVFHITFILHTNTHADLSWKVLNH 486
+Y+C N ++ P+ C + S+ KS ++F +TF + L WKV
Sbjct: 146 YYFC--NFELTFPRNCLTIGCSINACSSRFWTKSKLVIFVLTFSFAALLSSKLLWKVFKK 203
Query: 487 NS 492
++
Sbjct: 204 DN 205
>AF016420-1|AAB65307.2| 310|Caenorhabditis elegans Serpentine
receptor, class sx protein11 protein.
Length = 310
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 400 QKSYFIVFHITFILHTNTHADLSWKVLN 483
Q S IVFH FILH ++ D S LN
Sbjct: 280 QTSSAIVFHTNFILHKSSTMDFSASRLN 307
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,944,884
Number of Sequences: 27780
Number of extensions: 417774
Number of successful extensions: 1404
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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