Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10p23
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 42 9e-05
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 41 2e-04
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 40 4e-04
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 40 5e-04
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 39 6e-04
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 39 6e-04
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 39 8e-04
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 38 0.002
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 36 0.004
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 36 0.004
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 36 0.006
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 36 0.008
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 35 0.010
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 34 0.017
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 33 0.030
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 32 0.093
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 31 0.21
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 30 0.38
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 30 0.38
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 29 0.66
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb... 29 0.66
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 28 1.1
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 28 1.1
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 27 2.0
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 27 2.6
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 27 3.5
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 27 3.5
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 4.6
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 26 6.1
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 26 6.1
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces... 25 8.1
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 8.1
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 25 8.1
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 8.1
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 41.9 bits (94), Expect = 9e-05
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = -3
Query: 704 DDVCAICYXEMHSAKITR---CNHFFHGVCLRKWL-YVQDRCPLCHDILYK 564
+D C ICY + I R C H FH C+ W+ ++ CPLC++ YK
Sbjct: 202 EDFCIICYADYAFDDILRVLPCEHVFHTQCIDTWMTTMKASCPLCNEDYYK 252
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 40.7 bits (91), Expect = 2e-04
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Frame = -3
Query: 704 DDVCAICYXEMH----SAKITRCNHFFHGVCLRKWL-YVQDRCPLC 582
D+ C +C ++ +CNHFFH C+ +WL Q+ CPLC
Sbjct: 522 DERCLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLC 567
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 39.9 bits (89), Expect = 4e-04
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = -3
Query: 698 VCAICYXEMHSAKITRCNHFFHGVCLRKWLYVQDRCPLCHDILYK 564
+C IC + IT C H + CL WL CP+C L K
Sbjct: 1091 ICIICRDIIKQGFITTCGHLYCSFCLEAWLKHSSSCPMCKTKLNK 1135
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 39.5 bits (88), Expect = 5e-04
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -3
Query: 665 AKITRCNHFFHGVCLRKWLYVQDRCPLCHDILYKI 561
AKI C H+FH CL W V + CPLC K+
Sbjct: 52 AKIP-CGHYFHNHCLESWCRVANTCPLCRTEFLKV 85
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 39.1 bits (87), Expect = 6e-04
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Frame = -3
Query: 707 LDDVCAICYXEMHS-----AKITRCNHFFHGVCLRKWLYVQDRCPLC 582
+D C ICY +M+ A C H F CL+KWL CPLC
Sbjct: 103 MDLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLC 149
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 39.1 bits (87), Expect = 6e-04
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 695 CAICYXEMHSAKITRCNHFFHGVCLRKWLYVQDRCPLC 582
C++C +H T C H F C+ W + CPLC
Sbjct: 256 CSLCMEFIHCPAATECGHIFCWSCINGWTSKKSECPLC 293
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 38.7 bits (86), Expect = 8e-04
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = -3
Query: 701 DVCAICYXEMHSAKITR----CNHFFHGVCLRKWLYV-QDRCPLC 582
D C IC + I R C HFFH C+ +WL + CPLC
Sbjct: 764 DSCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLC 808
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 37.5 bits (83), Expect = 0.002
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 695 CAICYXEMHSAKITRCNHFFHGVCLRKWLYVQDRCPLC 582
C IC+ + IT C+H F C+R +L CP C
Sbjct: 29 CLICHEYFRAPLITSCSHTFCSFCIRDYLREHPMCPAC 66
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 36.3 bits (80), Expect = 0.004
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = -3
Query: 695 CAICYXEMHSAKITRCNHFFHGVCLRKWLYVQDRCPLCHDILY 567
C IC + T C H + CL WL CP C LY
Sbjct: 85 CPICTEALQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQKLY 127
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 36.3 bits (80), Expect = 0.004
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 695 CAICYXEMHSAKITRCNHFFHGVCLRKWLYVQDRCPLC 582
C IC+ ++ ++ C H F G CL + L +CP C
Sbjct: 169 CQICFGMLYDPVVSPCGHTFCGPCLMQALTQSPQCPTC 206
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 35.9 bits (79), Expect = 0.006
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Frame = -3
Query: 695 CAICYXEMH------SAKITRCNHFFHGVCLRKWLYVQD--RCPLC 582
CAICY + + + C H FH CL KW + RCPLC
Sbjct: 1558 CAICYSVLSVERTLPNKRCGTCRHKFHASCLYKWFKSSNSSRCPLC 1603
Score = 25.4 bits (53), Expect = 8.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 70 ERYVHIWLKFGKRI 29
E++ H+WLKFG I
Sbjct: 164 EKWPHVWLKFGSTI 177
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 35.5 bits (78), Expect = 0.008
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 650 CNHFFHGVCLRKWLYVQDRCPLC 582
C H H CLR WL Q CP+C
Sbjct: 328 CGHILHFHCLRNWLERQQTCPIC 350
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 35.1 bits (77), Expect = 0.010
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 659 ITRCNHFFHGVCLRKWLYVQDRCPLC 582
+T C+H +H CL +W+ + CP+C
Sbjct: 644 LTPCHHLYHRQCLLQWMETRSICPVC 669
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 34.3 bits (75), Expect = 0.017
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 650 CNHFFHGVCLRKWLYVQDRCPLC 582
C H+FH C++ WL V C +C
Sbjct: 414 CKHYFHENCIKPWLRVNGTCAIC 436
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 33.5 bits (73), Expect = 0.030
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 650 CNHFFHGVCLRKWLYVQDRCPL 585
CNH FH C+ +WL ++ CPL
Sbjct: 74 CNHAFHFHCISRWLNTRNVCPL 95
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 31.9 bits (69), Expect = 0.093
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = -3
Query: 695 CAICYXEMHSA---KITR-CNHFFHGVCLRKWLYVQDRCPLC 582
C +C M S+ IT C H FH CL+KW CP+C
Sbjct: 208 CVVCLERMDSSITGLITIVCQHTFHCPCLQKW--GNSSCPVC 247
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 30.7 bits (66), Expect = 0.21
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Frame = -3
Query: 695 CAICYXEM-HSAKITR---CNHFFHGVCLRKWLYV-QDRCPLC 582
C IC E + + R C+H FH C+ +L D CPLC
Sbjct: 498 CTICLCEYSEESPLYRELPCHHIFHPACIDPYLLKNSDLCPLC 540
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 29.9 bits (64), Expect = 0.38
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Frame = -3
Query: 695 CAICYXEMHSA-KITR--CNHFFHGVCLRKWLY-VQDRCPLCH 579
C IC K+ C H FH C+ KW+ + CP C+
Sbjct: 321 CVICLESFTKGDKVVALPCKHEFHRPCIAKWIVDYRHACPTCN 363
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 29.9 bits (64), Expect = 0.38
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Frame = -3
Query: 704 DDVCAICYXEMHSAKIT--RCNHFFHGVCLRKWLYV---QDRCPL 585
D C C + I +C H FH C++ WL Q +CP+
Sbjct: 32 DGCCPQCTSPGDNCPIVWGKCKHIFHAHCIQNWLATSGSQGQCPM 76
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 29.1 bits (62), Expect = 0.66
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = +1
Query: 208 PHVHLNVQTPLTKYHLSRNXXXXXXXVNHRCAVLITIILKRI-TYYTNR--KDYTTHTNK 378
P ++L TP + H S + T+++K I +T + +DY TNK
Sbjct: 563 PDLNLQRYTPTVEKHASDRNSVDYAQIASGIDTRTTVMIKNIPNKFTQQMLRDYIDVTNK 622
Query: 379 SLYKLLYFR 405
Y LY R
Sbjct: 623 GTYDFLYLR 631
>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 240
Score = 29.1 bits (62), Expect = 0.66
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 183 CTF*GTPKATRPFERSNALNEISFITKHNNNIKNRKSQVCRF 308
C P A R FE+ N L +I + KH ++ + Q+ F
Sbjct: 143 CIMADRPLAIRLFEQINGLQQICVVFKHKQTSQDTRFQILEF 184
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = -3
Query: 695 CAICYXEMHSAK----ITRCNHFFHGVCLRKWLYVQDRCPLCHDILYKI 561
C IC M +++ C+H H C +++ RCP C+ + +
Sbjct: 271 CPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTNYRCPTCYKTIINV 319
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Frame = -3
Query: 704 DDVCAICYXEMHSAKITRCNHFFHGVCLRKWL---YVQDRCPLC 582
D C IC + T C H F C+ L +CP+C
Sbjct: 203 DYKCVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKCPVC 246
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -2
Query: 498 EPCVGRGGGPTARGWREVAPPELISHTRLNVS 403
+P G P RG + V PE HT N+S
Sbjct: 436 DPRFAPRGSPPVRGGKNVLSPEAKEHTHKNIS 467
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Frame = -3
Query: 650 CNHFFHGVCLRKWLY--VQDRCPLC 582
C H H CLR W + D P+C
Sbjct: 806 CGHIGHESCLRSWYFDNTDDALPVC 830
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Frame = -3
Query: 707 LDDVCAICYXEMHS----AKITRCNHFFHGVCLRKWL 609
L C IC+ E + A+I C FH C R WL
Sbjct: 226 LGQECIICFEEFAAGDRVARIEYCLCIFHLKCYRDWL 262
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 225 RSNALNEISFITKHNNNIKNRKSQVCRFDNYNIKTN 332
R L+++S + K+N + K+ K FD N+ TN
Sbjct: 50 RRTVLSDVSNVGKNNADEKDTKKAKRSFDESNLSTN 85
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Frame = -3
Query: 695 CAICYXEMH-SAKITRCN---HFFHGVCLRKW 612
C++C ++ S I C H FH C+RKW
Sbjct: 197 CSVCTDTINPSTSIWSCGTCYHVFHLSCIRKW 228
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 698 VCAICYXEMHSAKITRCNHFFHGVCLRKWL 609
VC IC A +RC+H F +C+ +++
Sbjct: 710 VCKICDEVAQDAIESRCHHTFCRLCVTEYI 739
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 571 RISWHSGHRSCTYSHFL-KXTPWKKWLQRVIFAECIS 678
RI+ +S H+SC Y H + + + R++F E ++
Sbjct: 410 RITCYSSHQSCPYFHIIWDLYSMSRLVDRLVFPEPVT 446
>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 210 TRPFERSNA--LNEISFITKHNNNIKNRKSQVCRFDNYN 320
T P+ NA L+++ + + N+ NR+ +C F+ N
Sbjct: 104 TSPYTHHNAEPLHDLQTFSSNLNHSNNRRQTICNFNMAN 142
>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +3
Query: 198 TPKATRPFERSNALNEISFITKHNNNIKNRKSQVCRFDNYNIKTNNLLYKSKGLYHTH 371
+PK+ P E + +NE+S K KS + N+ K + + K G+++T+
Sbjct: 35 SPKSQNPSEEATTVNELSCEAKPKLLFTPTKSSL-SIGNFPYKEFDPVLKFPGIHYTY 91
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 8.1
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 186 TF*GTPKATRPFERSNALNEISFITKHNNNIKNRKSQVCRFDNYNIKTNNLL--YKSKGL 359
TF G P A R + +NE+ N K K+ RFD++ K NL+ Y +GL
Sbjct: 323 TFGGNPVACRV--GTFCVNELGSSKILQNVRKQHKALTSRFDDFVAKYPNLIRGYAGRGL 380
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -3
Query: 704 DDVCAICYXEMHSAKITRCNHFFHGVC-LR-KWLYVQDRCPLC 582
+ +C IC + + + CNH VC LR + LY C C
Sbjct: 78 EQICFICAEGITYSCVLPCNHRMCHVCALRLRALYKTKECTFC 120
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,504,376
Number of Sequences: 5004
Number of extensions: 46464
Number of successful extensions: 157
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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