Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10p22
(780 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 239 2e-63
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 238 3e-63
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 238 4e-63
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 233 2e-61
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 231 5e-61
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 227 8e-60
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 137 1e-32
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 126 2e-29
12_01_0915 - 8908643-8908756,8909086-8909203,8909570-8909682,891... 32 0.59
08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,462... 29 3.1
02_02_0106 + 6814391-6817007,6817086-6817462 29 4.1
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 28 7.2
04_04_1588 - 34633057-34633824 28 7.2
06_03_1237 + 28602250-28604196 28 9.6
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 239 bits (584), Expect = 2e-63
Identities = 112/161 (69%), Positives = 133/161 (82%)
Frame = -2
Query: 776 GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLA 597
G+E + + KEYR K+E EL +IC +L LLD HL+P ++ PESKVFYLKMKGDYYRYLA
Sbjct: 299 GNEDRCTLIKEYRGKIETELSKICDGILKLLDSHLVPSSTAPESKVFYLKMKGDYYRYLA 358
Query: 596 EVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQ 417
E TG R E++ AY+ A +I+ A++ PTHPIRLGLALNFSVFYYEILNSPD+AC
Sbjct: 359 EFKTGAERKDAAENTMVAYKAAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACN 418
Query: 416 LAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD 294
LAKQAFD+AI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD
Sbjct: 419 LAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSD 459
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 238 bits (583), Expect = 3e-63
Identities = 116/172 (67%), Positives = 134/172 (77%), Gaps = 1/172 (0%)
Frame = -2
Query: 776 GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLA 597
G+E + KEYR K+E EL +IC +L LLD HL+P ++ ESKVFYLKMKGDY+RYLA
Sbjct: 75 GNEEHVTLIKEYRGKIEAELSKICDGILKLLDSHLVPSSTAAESKVFYLKMKGDYHRYLA 134
Query: 596 EVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQ 417
E TG R E + AY+ A +I+ A + PTHPIRLGLALNFSVFYYEILNSPDKAC
Sbjct: 135 EFKTGAERKEAAESTMVAYKAAQDIALADLAPTHPIRLGLALNFSVFYYEILNSPDKACN 194
Query: 416 LAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD-TQGDGDEPAE 264
LAKQAFD+AI+ELDTL E+SYKDSTLIMQLLRDNLTLWTSD T+ GDE E
Sbjct: 195 LAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDLTEDGGDEVKE 246
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 238 bits (582), Expect = 4e-63
Identities = 112/168 (66%), Positives = 135/168 (80%)
Frame = -2
Query: 776 GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLA 597
G+E + + K+YR K+E EL +IC +L LL+ HL+P ++ PESKVFYLKMKGDYYRYLA
Sbjct: 81 GNEDRVTLIKDYRGKIETELTKICDGILKLLESHLVPSSTAPESKVFYLKMKGDYYRYLA 140
Query: 596 EVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQ 417
E TG R E++ AY+ A +I+ A++ PTHPIRLGLALNFSVFYYEILNSPD+AC
Sbjct: 141 EFKTGAERKDAAENTMVAYKAAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACN 200
Query: 416 LAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 273
LAKQAFD+AI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD D E
Sbjct: 201 LAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDISEDTAE 248
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 233 bits (569), Expect = 2e-61
Identities = 112/168 (66%), Positives = 130/168 (77%)
Frame = -2
Query: 776 GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLA 597
G+E KEYR ++E EL +IC +L LLD HL+P A+ ESKVFYLKMKGDY+RYLA
Sbjct: 80 GNEAYVASIKEYRSRIETELSKICDGILKLLDSHLVPSATAAESKVFYLKMKGDYHRYLA 139
Query: 596 EVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQ 417
E +G R E++ AY+ A +I+ A + THPIRLGLALNFSVFYYEILNSPD+AC
Sbjct: 140 EFKSGAERKEAAENTLVAYKSAQDIALADLPTTHPIRLGLALNFSVFYYEILNSPDRACN 199
Query: 416 LAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 273
LAKQAFDDAIAELDTL E+SYKDSTLIMQLLRDNLTLWTSD DG +
Sbjct: 200 LAKQAFDDAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDNAEDGGD 247
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 231 bits (565), Expect = 5e-61
Identities = 108/168 (64%), Positives = 128/168 (76%)
Frame = -2
Query: 776 GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLA 597
G++ + YR K+E EL IC +L LLD HL+P A ESKVFYLKMKGDY+RYLA
Sbjct: 58 GNDAHAATIRSYRGKIEAELARICDGILALLDSHLVPSAGAAESKVFYLKMKGDYHRYLA 117
Query: 596 EVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQ 417
E +G+ R E + AY+ A +I+ A + PTHPIRLGLALNFSVFYYEILNSPD+AC
Sbjct: 118 EFKSGDERKQAAESTMNAYKAAQDIALADLAPTHPIRLGLALNFSVFYYEILNSPDRACN 177
Query: 416 LAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 273
LAKQAFD+AI+ELD+L E+SYKDSTLIMQLLRDNLTLWTSD DG +
Sbjct: 178 LAKQAFDEAISELDSLGEESYKDSTLIMQLLRDNLTLWTSDANDDGGD 225
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 227 bits (555), Expect = 8e-60
Identities = 107/160 (66%), Positives = 127/160 (79%)
Frame = -2
Query: 752 AKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETR 573
A+ YR +VE EL IC +L LLD+ L+P A+ ++KVFYLKMKGDY+RYLAE TG R
Sbjct: 93 ARSYRARVEAELSNICAGILRLLDERLVPAAAAVDAKVFYLKMKGDYHRYLAEFKTGAER 152
Query: 572 HSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDD 393
+ + AYQ A +I+ ++ PTHPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+
Sbjct: 153 KDAADATLAAYQAAQDIAMKELSPTHPIRLGLALNFSVFYYEILNSPDRACTLAKQAFDE 212
Query: 392 AIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 273
AI+ELDTL E+SYKDSTLIMQLLRDNLTLWTSD Q DG +
Sbjct: 213 AISELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGGD 252
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 137 bits (331), Expect = 1e-32
Identities = 80/190 (42%), Positives = 109/190 (57%), Gaps = 15/190 (7%)
Frame = -2
Query: 779 EGSERKQQMAKEYRVKVEKELREICYDVLGLLDK-----HLIPKASNPESKVFYLKMKGD 615
+G E + EYR KVE E+ +IC DV+ ++DK + + K+ ++ +
Sbjct: 51 KGKESHVRQTAEYRRKVEAEMDKICCDVINIIDKKGDYYRYLAEFKTGTEKIEVSELSLN 110
Query: 614 YYR----------YLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNF 465
Y +L T ++ + A + ++ + PT PIRLGLALN
Sbjct: 111 AYEACDPFFIFNLFLFSQVTCFIEFTIYQ--VLVVYTASKTAQTDLTPTDPIRLGLALNI 168
Query: 464 SVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQG 285
SVFY EI+NSPDKACQLAK AFD+A+AEL +L+E++YKDSTLIMQLLRDNL LW SD
Sbjct: 169 SVFYCEIMNSPDKACQLAKNAFDEAVAELPSLSEENYKDSTLIMQLLRDNLALWNSDMAD 228
Query: 284 DGDEPAEGGD 255
D D+ E D
Sbjct: 229 DADDIRERTD 238
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 126 bits (304), Expect = 2e-29
Identities = 68/153 (44%), Positives = 99/153 (64%)
Frame = -2
Query: 743 YRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSV 564
Y+ KVE ELR +C +VL ++ H +P A++ E+ VF+ KMKGDYYRYLAE +TG + +
Sbjct: 83 YKKKVEDELRAVCNEVLSIIAIHCLPLANSGENVVFFYKMKGDYYRYLAEFSTGTEKKAA 142
Query: 563 VEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIA 384
+ S AYQ A+ ++ FS+ EI+NSP++A Q+AKQA D+A A
Sbjct: 143 TDQSLMAYQ-AWPCAQL---------------FSLL--EIMNSPERASQVAKQALDEATA 184
Query: 383 ELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQG 285
E+++ + YKDS L+MQLL++NL LWTS+ G
Sbjct: 185 EINSAGVEGYKDSMLMMQLLKENLALWTSELTG 217
>12_01_0915 -
8908643-8908756,8909086-8909203,8909570-8909682,
8911138-8911218,8911307-8911357,8912173-8912232,
8913353-8913419,8913509-8913759
Length = 284
Score = 31.9 bits (69), Expect = 0.59
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 3/115 (2%)
Frame = -2
Query: 740 RVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVV 561
RVK + + EI L KH K +PES+ ++K+ Y E G+ +++
Sbjct: 63 RVKQDANVSEIKKAYYKLSLKHHPDKNPDPESRKLFVKIANAYEILKDESTRGQYDYAIA 122
Query: 560 EDSQKAYQDAFEISKAKMQPTHP--IRLGLALNFSVF-YYEILNSPDKACQLAKQ 405
+ Y A T P + +GL L S F Y KA + KQ
Sbjct: 123 HPEEVFYNTAQYYRAYYGHKTDPRAVLIGLLLIISAFQYLNQFGRYSKAIETVKQ 177
>08_01_0533 +
4625376-4625709,4625799-4625966,4627428-4627689,
4627787-4627934,4628453-4628496,4628812-4628859,
4629245-4630509,4630741-4630839,4630916-4631097,
4631186-4631246,4631488-4631725,4631818-4631971,
4632042-4632335
Length = 1098
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = -2
Query: 464 SVFYYEILNSPDKACQLAKQAFDDAIAEL-DTLNEDSYKDSTLIMQLLRD-NLTLWTSDT 291
S Y + PD + K++FD+ + E + +Y S + ++ D LWT +
Sbjct: 676 SFLTYPSMKVPDNFIYIHKRSFDECMVECRSNCSCVAYAYSNISSGIIDDTRCLLWTGEL 735
Query: 290 QGDGDEPAEGGDN*YLAA 237
D ++ +GG+N Y+ A
Sbjct: 736 I-DMEKVTQGGENLYIRA 752
>02_02_0106 + 6814391-6817007,6817086-6817462
Length = 997
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 204 CL*ENE*HSRTSSGAVSSPKPTRAVACKNVKSRSQRTFPFRLKL-NVVSSLTVL 46
CL +N H S +SSP PT C N+K F KL N ++SL L
Sbjct: 93 CLLKNLTHLDVSYNNISSPFPTMLYNCSNLKYLDLSNNAFAGKLPNDINSLPAL 146
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = -2
Query: 722 ELREICYDVLGLLDKHLIPKASNPES-----KVFYLKMKG 618
+LRE+ YD+ LD+ L+ A+ P S K+ K+KG
Sbjct: 71 DLRELSYDMEDSLDRFLVKSAAEPGSCKKLFKILLTKIKG 110
>04_04_1588 - 34633057-34633824
Length = 255
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 216 KCVCWGECGEILVVAALGRLVAIALSV*RPK 308
+CVCW +++ ALG I +V +PK
Sbjct: 68 RCVCWTLLAVLVLAVALGATAGILYAVFKPK 98
>06_03_1237 + 28602250-28604196
Length = 648
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/72 (23%), Positives = 36/72 (50%)
Frame = -2
Query: 692 GLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKA 513
GL+D + + SKVFY + + Y Y + +A G H ++ +++ +++A
Sbjct: 314 GLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIA-GLASHGRASEAIALFKEM--VNRA 370
Query: 512 KMQPTHPIRLGL 477
++P H +G+
Sbjct: 371 NVEPNHVTFIGV 382
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,551,626
Number of Sequences: 37544
Number of extensions: 394696
Number of successful extensions: 1145
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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