Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10p20
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    29   0.70 
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    27   2.1  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   2.8  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   4.9  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    26   6.5  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    26   6.5  
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    26   6.5  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    25   8.6  

>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +1

Query: 130 PSPKTETMQYIVLFSQRTVHEPSVVLSQ*QEELVCSPAPFFCSIVQVTTY 279
           P     T    ++++QR  + P  VL    E  VC P+PF   ++    Y
Sbjct: 215 PKEALRTRGLAIVWNQRWKNSPESVLKARSEITVCKPSPFHPQLIAGGAY 264


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/56 (26%), Positives = 31/56 (55%)
 Frame = +2

Query: 521 FTNTKQLINHHYYTFKPEETLNRQNKTNRTT*HLAFPPKSPYNNTHKLIDRYLALW 688
           FTNT++L++   +  +PE+ L + N+T+    ++       +NN    I R++ +W
Sbjct: 20  FTNTEKLVDELDHNVEPEQLLEK-NRTDFKLMYVIVKFYRWFNNL-SFITRWITIW 73


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 490 PLDVTSRDPPKSPLKKSQT 434
           PL V+ R PPK PL+K  T
Sbjct: 298 PLHVSPRKPPKPPLRKVST 316


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = -3

Query: 479 NFSGSSKKSTEKISNQFIVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQLT 300
           NFS  +  + E +SN +   +  K     IEN+  G  Y+  ++   T+  ++   G  +
Sbjct: 350 NFS-LAPGTPESLSNTYRELNSFKSYAVEIENTAQGHTYEPEDLYLETTVFMDGPYGTTS 408

Query: 299 KLQKPYKYVV 270
            + K Y YV+
Sbjct: 409 NVFKEYSYVL 418


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 434 QFIVDDVSKIIKEAIENSIGGTAYQH 357
           +F   D+S+ +  AI N+IG  AY H
Sbjct: 306 EFAPQDISRSLLLAISNNIGQIAYLH 331


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -3

Query: 464  SKKSTEKISNQFIVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSA 330
            SK +    S + I+D +   +K+ ++++   TAY  N  N  T A
Sbjct: 1086 SKLNKSNSSKKIIIDPLKDSMKDLVQHAFTITAYDSNIHNALTRA 1130


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 482 VQRLCFIFPHLCTFTNTK-QLINHHYYTFKPE 574
           +Q++C +F H  T  +T+ Q++   Y+   PE
Sbjct: 161 LQQICVVFKHKQTSQDTRFQILEFFYFYLSPE 192


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 455 STEKISNQFIVDDVSKIIKEAIENSIGGTA 366
           +  KI +  ++ DV+  +KE +ENS+   A
Sbjct: 11  TVHKICSGQVITDVASAVKELVENSLDSGA 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,206,911
Number of Sequences: 5004
Number of extensions: 68899
Number of successful extensions: 193
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)