Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10p20
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0233 + 19063780-19064404,19065480-19065601                       30   2.2  
06_01_0587 - 4211917-4212021,4212250-4212478,4213426-4213759,421...    29   2.9  
01_01_0703 - 5425713-5425862,5426302-5426451,5426853-5426964,542...    29   3.9  
12_02_0546 - 20289272-20289470,20290054-20290223                       28   6.8  
09_02_0384 - 8294914-8297817                                           28   9.0  
07_03_0486 - 18634813-18635168,18635258-18638726                       28   9.0  

>03_04_0233 + 19063780-19064404,19065480-19065601
          Length = 248

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 743 ERPPGPPSNPSIIKKKILTI 684
           E+PP PPS+P  +K+K+L +
Sbjct: 3   EKPPPPPSSPGYVKEKMLKL 22


>06_01_0587 -
           4211917-4212021,4212250-4212478,4213426-4213759,
           4215116-4215186,4215374-4215493,4216353-4216771,
           4216885-4217336,4217434-4217812
          Length = 702

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 378 WRHCLSTQQCQPMDF 334
           W+HC++  QCQ +DF
Sbjct: 455 WQHCIAVAQCQALDF 469


>01_01_0703 -
           5425713-5425862,5426302-5426451,5426853-5426964,
           5427120-5427481,5427578-5427712,5427812-5427889,
           5427989-5428174,5428266-5428452,5428552-5428658,
           5428732-5428806,5428885-5429040,5429165-5429437,
           5429548-5429643,5429724-5429814,5429883-5430385
          Length = 886

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +2

Query: 212 NNKKNLYAVLHHSSAVLCRSLHICMVF 292
           +N+  L AV HH SA+LC SL    VF
Sbjct: 766 SNESILKAVWHHPSAILCCSLKAMPVF 792


>12_02_0546 - 20289272-20289470,20290054-20290223
          Length = 122

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +2

Query: 500 IFPHLCTFTNTKQLINHHYYTFKPEETLNRQN-KTNRTT*HLAFPPKSPYNNTHKLIDRY 676
           I PH+ T+    +L+  H+       T++  +  TN+ + H +FP K+P ++  K  +RY
Sbjct: 67  IHPHMHTYA---KLL--HWKIASMSSTISMSSLSTNKLSIHASFPKKNPLHSKRKRRERY 121


>09_02_0384 - 8294914-8297817
          Length = 967

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +2

Query: 512 LCTFTNTKQLINHHYYTFKPEETLNRQNKTNR 607
           LC+F N  QL  +  Y FKPEE L +  + NR
Sbjct: 15  LCSFGNCLQL--NIAYAFKPEEVLVKLTEFNR 44


>07_03_0486 - 18634813-18635168,18635258-18638726
          Length = 1274

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 226 VLLVIGITLLMAHARSVGRIKLCTALSQSLG 134
           VLLVI + L+    R  G +  CTA S SLG
Sbjct: 899 VLLVIVLVLIAVRRRRSGEVN-CTAFSSSLG 928


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,120,516
Number of Sequences: 37544
Number of extensions: 419183
Number of successful extensions: 993
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)