Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10p20
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71259-5|CAA95796.1|  106|Caenorhabditis elegans Hypothetical pr...    83   2e-16
Z66500-5|CAA91306.1|  168|Caenorhabditis elegans Hypothetical pr...    62   4e-10
U40938-8|AAA81699.1|  123|Caenorhabditis elegans Hypothetical pr...    48   9e-06
Z11126-2|CAA77473.1|  197|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z81517-2|CAB04209.1|  973|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z49207-6|CAJ58500.1|  348|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z49207-5|CAA89070.1|  402|Caenorhabditis elegans Hypothetical pr...    29   3.5  

>Z71259-5|CAA95796.1|  106|Caenorhabditis elegans Hypothetical
           protein F13G3.4 protein.
          Length = 106

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
 Frame = -3

Query: 422 DDVSKIIKEAIENSIGG-TAYQHNNVNQWTSAVVESCLGQLTKLQKPYKYVVTCTILQ-K 249
           +DV  IIK+ ++  +G  T Y H +  QW    VE    +L    KPYKYVVT + LQ  
Sbjct: 6   EDVHMIIKQVLDEVVGASTQYTHKDSVQWNQKAVEQITKKLVAAGKPYKYVVTSSFLQIS 65

Query: 248 NGAGLHTSSSCYWDNTTDGSCTVRWENKTMYCIVSV 141
           +G+GL+ S+  YW+  TD S   RWE KTM  IV V
Sbjct: 66  SGSGLNVSTISYWNKVTDSSYMYRWEAKTMLAIVYV 101


>Z66500-5|CAA91306.1|  168|Caenorhabditis elegans Hypothetical
           protein T05C12.5 protein.
          Length = 168

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
 Frame = -3

Query: 464 SKKSTEKISNQFIVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQLTKLQKP 285
           +KK  +K+ +     ++  II+++ ++ IG T Y    ++ W S ++++    L KL   
Sbjct: 51  NKKLKKKVYSNAEEQEIDLIIQKSFDSIIGKTPYSPFKMSDWMSKMIQTISDNLVKLNGS 110

Query: 284 YKYVVTCTILQK-NGAGLHTSSSCYWDNTTDGSCTVRWENKTMYCIVSV 141
            K++V CTI  K +   + T++ C WD T D +    W +KT++  V V
Sbjct: 111 KKFLVHCTISAKTDNLAICTANMCSWDTTKDTAYYSEWMSKTIFGAVQV 159


>U40938-8|AAA81699.1|  123|Caenorhabditis elegans Hypothetical
           protein D1009.5 protein.
          Length = 123

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
 Frame = -3

Query: 416 VSKIIKEAIENSIGG-TAYQHNNVNQWTSAVVESCLGQLTKLQKP-YKYVVTCTILQKNG 243
           V+ +I+E +   +G  T Y  +     +  +  S   +L  LQ P YKYV+   I ++ G
Sbjct: 24  VAGMIQEILGEKLGALTIYNVDEAELVSKDISASIRERLKGLQLPRYKYVIQTMIAEQCG 83

Query: 242 AGLHTSSSCYWDNTTDGSCTVRWENKTMYCIVSV 141
            G  T+  C WD   DG  T R+   +++C V V
Sbjct: 84  NGATTAVQCVWDEDCDGYLTQRYVTGSIWCEVLV 117


>Z11126-2|CAA77473.1|  197|Caenorhabditis elegans Hypothetical
           protein ZK643.2 protein.
          Length = 197

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +2

Query: 209 PNNKKNLYAVLHHSSAVL---CRSLHICMVFVT*STAPDMTQQLLKS 340
           P + K+LY V    +A++   C +LH C V+VT        Q L++S
Sbjct: 107 PEDNKHLYVVHAEMNAIINKRCTTLHDCTVYVTLFPCNKCAQMLIQS 153


>Z81517-2|CAB04209.1|  973|Caenorhabditis elegans Hypothetical
           protein F28B1.2 protein.
          Length = 973

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = -3

Query: 479 NFSGSSKKSTEKISNQFIVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQLT 300
           N +G+  K +E +  Q    +V    K+ ++N++GG  + +N V Q      + CL  +T
Sbjct: 298 NPAGACVKYSEPVEMQKCKCNVKLFNKKNVQNNVGGNYFYYNTVWQPIVKTNDDCLLSIT 357


>Z49207-6|CAJ58500.1|  348|Caenorhabditis elegans Hypothetical
           protein R07E3.1b protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = -3

Query: 467 SSKKSTEKISNQFIVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCL 312
           +S++S ++++  +  D+   I    I+N  G   Y HN+++ WT    E  L
Sbjct: 49  TSQESLKRLNAYYNTDE--NIANWNIQNEHGSAEYGHNDMSDWTDEEFEKTL 98


>Z49207-5|CAA89070.1|  402|Caenorhabditis elegans Hypothetical
           protein R07E3.1a protein.
          Length = 402

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = -3

Query: 467 SSKKSTEKISNQFIVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCL 312
           +S++S ++++  +  D+   I    I+N  G   Y HN+++ WT    E  L
Sbjct: 103 TSQESLKRLNAYYNTDE--NIANWNIQNEHGSAEYGHNDMSDWTDEEFEKTL 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,865,552
Number of Sequences: 27780
Number of extensions: 399381
Number of successful extensions: 1150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)