Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10p18
         (846 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY102657-1|AAM27486.1|  546|Drosophila melanogaster GH05104p pro...   143   3e-34
AE014297-3460|AAF56237.1|  546|Drosophila melanogaster CG13607-P...   143   3e-34
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P...    30   3.5  
BT029727-1|ABL75784.1|  288|Drosophila melanogaster IP17596p pro...    30   4.6  
AE014298-2776|AAN09479.1|  608|Drosophila melanogaster CG32543-P...    29   8.0  

>AY102657-1|AAM27486.1|  546|Drosophila melanogaster GH05104p
           protein.
          Length = 546

 Score =  143 bits (346), Expect = 3e-34
 Identities = 78/210 (37%), Positives = 123/210 (58%), Gaps = 28/210 (13%)
 Frame = -2

Query: 836 RHFIASAGARGARDRLRFVMPEEKTQFRFPR-EISAEKPWVIVREPKG-EKIVTCTTLKE 663
           R+ + +AG +G  +R ++++P  + + +  + +IS  +PW++VR+  G    VTCTT+K+
Sbjct: 313 RNILMAAGMQGVLERHKYILPNRRAELKLNQHDISERQPWLVVRDQPGYHHYVTCTTVKD 372

Query: 662 SRAVNNVTCRVDAARKGLVP-QKDDEA--DAWVQRFVSFLAPVRPMTGHVSFRLVREENP 492
           SR V NV+CRV+   K L+P  +DDEA  + W++ F + +   RP+ GH+SFRLV+    
Sbjct: 373 SRVVANVSCRVEHHTKNLIPVPRDDEAQIELWLRSFFAKVRFQRPINGHISFRLVK---- 428

Query: 491 SNGHSNKLIAIGARVGVSLPYLCQGQT---------RCGH--------------AAAVGK 381
           S  H  + + +G R+GV+LPY+C  ++         +C H              +A    
Sbjct: 429 SPAHGGQFVPLGTRLGVALPYICHNRSHAQLLCRAMKCIHRRGLPEDELPNWSWSALERT 488

Query: 380 LLDTVLDTREALFAFWDPLPYCAYYQSRMP 291
              T LD REALFA+WDPLPYCAYY  ++P
Sbjct: 489 TSTTALDKREALFAYWDPLPYCAYYHFQLP 518


>AE014297-3460|AAF56237.1|  546|Drosophila melanogaster CG13607-PA
           protein.
          Length = 546

 Score =  143 bits (346), Expect = 3e-34
 Identities = 78/210 (37%), Positives = 123/210 (58%), Gaps = 28/210 (13%)
 Frame = -2

Query: 836 RHFIASAGARGARDRLRFVMPEEKTQFRFPR-EISAEKPWVIVREPKG-EKIVTCTTLKE 663
           R+ + +AG +G  +R ++++P  + + +  + +IS  +PW++VR+  G    VTCTT+K+
Sbjct: 313 RNILMAAGMQGVLERHKYILPNRRAELKLNQHDISERQPWLVVRDQPGYHHYVTCTTVKD 372

Query: 662 SRAVNNVTCRVDAARKGLVP-QKDDEA--DAWVQRFVSFLAPVRPMTGHVSFRLVREENP 492
           SR V NV+CRV+   K L+P  +DDEA  + W++ F + +   RP+ GH+SFRLV+    
Sbjct: 373 SRVVANVSCRVEHHTKNLIPVPRDDEAQIELWLRSFFAKVRFQRPINGHISFRLVK---- 428

Query: 491 SNGHSNKLIAIGARVGVSLPYLCQGQT---------RCGH--------------AAAVGK 381
           S  H  + + +G R+GV+LPY+C  ++         +C H              +A    
Sbjct: 429 SPAHGGQFVPLGTRLGVALPYICHNRSHAQLLCRAMKCIHRRGLPEDELPNWSWSALERT 488

Query: 380 LLDTVLDTREALFAFWDPLPYCAYYQSRMP 291
              T LD REALFA+WDPLPYCAYY  ++P
Sbjct: 489 TSTTALDKREALFAYWDPLPYCAYYHFQLP 518


>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
             protein.
          Length = 23015

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = +1

Query: 445   PTLAPMAISLFECPFDGFSSRTSLNDTCPVMGLTGARNDTNL*TQASASSSFCG 606
             P   P  ++  ECP D    R   ND CP  G+ G+  D  +   A   S   G
Sbjct: 16822 PNCRPECVTSAECPHDKACIRQKCNDPCP--GVCGSNADCRVIQHAPICSCRAG 16873


>BT029727-1|ABL75784.1|  288|Drosophila melanogaster IP17596p
           protein.
          Length = 288

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 6/109 (5%)
 Frame = +1

Query: 325 SGSQNANNASRVSKTVSSSFPTAAACPHLVCP*HKYGRDTPTLAPMAIS---LFECPFDG 495
           S S N NN+S  +   SSS   +  C +L C       +T        S      C  DG
Sbjct: 12  SHSNNNNNSSNYNSKRSSSSNNSDTCNNLNCSSSNISTETSDSNATTCSSNIYCNCNIDG 71

Query: 496 FSSRTSLNDTCPVMGLTGARNDTNL*TQASASSSFC---GTRPLRAAST 633
            S     N +      + + N++N+ T  S ++  C    T+P+ ++ +
Sbjct: 72  LSEENCANGS----ATSSSSNNSNIVTNCSCNNISCSSSNTQPITSSKS 116


>AE014298-2776|AAN09479.1|  608|Drosophila melanogaster CG32543-PA
           protein.
          Length = 608

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +1

Query: 361 SKTVSSSFPTAAACPHLVCP*HKYGRDTPTLAPMA-ISLFECPFDGFSSRTSLNDTCPVM 537
           +++ SSS   AAA    VCP        P   P A + L  CP++   S T      P +
Sbjct: 99  TESTSSSTALAAAASSAVCPWDDPAESVPPPPPPAQVKLSVCPWE-LDSATETPTAAPAV 157

Query: 538 GLTG 549
           G  G
Sbjct: 158 GSGG 161


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,593,815
Number of Sequences: 53049
Number of extensions: 902411
Number of successful extensions: 2411
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2402
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4044853644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)