Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10p18
         (846 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY303575-1|AAP57297.1|  382|Caenorhabditis elegans cell death-re...    33   0.34 
AC024791-9|AAF60653.1|  382|Caenorhabditis elegans Cell-death-re...    33   0.34 
U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.        29   5.5  
U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryo...    29   5.5  
U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryo...    29   5.5  
U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryo...    29   5.5  

>AY303575-1|AAP57297.1|  382|Caenorhabditis elegans cell
           death-related nuclease 1 protein.
          Length = 382

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -2

Query: 515 RLVREENPSNGHSNKLIAIGARVGVSLPYLCQGQTRCGHAAAVGKLLDTVLDTREAL 345
           RLV+     N  + +L+ +     V  P  C+ + +C H    GK+  TV +  +AL
Sbjct: 129 RLVKVTKQQNDEAKRLLGLMGIPVVEAP--CEAEAQCAHLVKAGKVFGTVTEDMDAL 183


>AC024791-9|AAF60653.1|  382|Caenorhabditis elegans
           Cell-death-related nuclease protein1 protein.
          Length = 382

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -2

Query: 515 RLVREENPSNGHSNKLIAIGARVGVSLPYLCQGQTRCGHAAAVGKLLDTVLDTREAL 345
           RLV+     N  + +L+ +     V  P  C+ + +C H    GK+  TV +  +AL
Sbjct: 129 RLVKVTKQQNDEAKRLLGLMGIPVVEAP--CEAEAQCAHLVKAGKVFGTVTEDMDAL 183


>U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.
          Length = 1379

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
 Frame = +1

Query: 325 SGSQNANNASRVSKTVSSSFPTAAACPHLVCP*HKYGRDTPTLAPMAISLFE--CPFDGF 498
           + S+N  N   +        P     P L+ P     +DTP L+P   S FE   PF   
Sbjct: 608 ASSENKENEETLKVVEEEKIPQKLPLPALMTP--PVPKDTPALSPSGASRFEIVIPFING 665

Query: 499 SSRTSL 516
           SS   L
Sbjct: 666 SSSAGL 671


>U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryonic
           partitioningof cytoplasm protein 3, isoform c protein.
          Length = 1340

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
 Frame = +1

Query: 325 SGSQNANNASRVSKTVSSSFPTAAACPHLVCP*HKYGRDTPTLAPMAISLFE--CPFDGF 498
           + S+N  N   +        P     P L+ P     +DTP L+P   S FE   PF   
Sbjct: 572 ASSENKENEETLKVVEEEKIPQKLPLPALMTP--PVPKDTPALSPSGASRFEIVIPFING 629

Query: 499 SSRTSL 516
           SS   L
Sbjct: 630 SSSAGL 635


>U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryonic
           partitioningof cytoplasm protein 3, isoform a protein.
          Length = 1376

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
 Frame = +1

Query: 325 SGSQNANNASRVSKTVSSSFPTAAACPHLVCP*HKYGRDTPTLAPMAISLFE--CPFDGF 498
           + S+N  N   +        P     P L+ P     +DTP L+P   S FE   PF   
Sbjct: 608 ASSENKENEETLKVVEEEKIPQKLPLPALMTP--PVPKDTPALSPSGASRFEIVIPFING 665

Query: 499 SSRTSL 516
           SS   L
Sbjct: 666 SSSAGL 671


>U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryonic
           partitioningof cytoplasm protein 3, isoform b protein.
          Length = 1379

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
 Frame = +1

Query: 325 SGSQNANNASRVSKTVSSSFPTAAACPHLVCP*HKYGRDTPTLAPMAISLFE--CPFDGF 498
           + S+N  N   +        P     P L+ P     +DTP L+P   S FE   PF   
Sbjct: 608 ASSENKENEETLKVVEEEKIPQKLPLPALMTP--PVPKDTPALSPSGASRFEIVIPFING 665

Query: 499 SSRTSL 516
           SS   L
Sbjct: 666 SSSAGL 671


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,866,050
Number of Sequences: 27780
Number of extensions: 442060
Number of successful extensions: 1149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)