Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10p16
(783 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X53793-1|CAA37801.1| 425|Homo sapiens ADE2H1 protein. 241 2e-63
BT006988-1|AAP35634.1| 425|Homo sapiens phosphoribosylaminoimid... 241 2e-63
BC019255-1|AAH19255.1| 425|Homo sapiens phosphoribosylaminoimid... 241 2e-63
BC010273-1|AAH10273.1| 425|Homo sapiens phosphoribosylaminoimid... 241 2e-63
BC050477-1|AAH50477.1| 904|Homo sapiens zinc finger protein 598... 30 8.2
BC041015-1|AAH41015.1| 523|Homo sapiens ZNF598 protein protein. 30 8.2
>X53793-1|CAA37801.1| 425|Homo sapiens ADE2H1 protein.
Length = 425
Score = 241 bits (590), Expect = 2e-63
Identities = 118/209 (56%), Positives = 149/209 (71%), Gaps = 2/209 (0%)
Frame = -1
Query: 783 SWRLWPSGDKRLMVDKQVYRNLTTVTAADLDTVKRNFAWVKDQLDFL-KPTIHHKVVVFM 607
SWRLWPSGD+ DKQ YR+L VT L VK+NF WV ++++ L K +VVV M
Sbjct: 213 SWRLWPSGDRSQQKDKQSYRDLKEVTPEGLQMVKKNFEWVAERVELLLKSESQCRVVVLM 272
Query: 606 GSPADQEHCQKIAKAARELGLDVDLRVTSAHKATEETLRIMQQYEDTHGALVFIAVAGRS 427
GS +D HC+KI KA G+ +LRVTSAHK +ETLRI +YE VF+AVAGRS
Sbjct: 273 GSTSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRS 332
Query: 426 NGLGPVLSGNTSYPVINCPP-PSDKLVQDIWSSLSVPSGLGCATVIYPDSAALMAAQIIG 250
NGLGPV+SGNT+YPVI+CPP D VQD+WSSL +PSGLGC+TV+ P+ +A AAQI G
Sbjct: 333 NGLGPVMSGNTAYPVISCPPLTPDWGVQDVWSSLRLPSGLGCSTVLSPEGSAQFAAQIFG 392
Query: 249 LQDYLVWGRLRSKQLDMAHSLRQADKKLR 163
L ++LVW +LR+ L+ SL+QADKK+R
Sbjct: 393 LSNHLVWSKLRASILNTWISLKQADKKIR 421
>BT006988-1|AAP35634.1| 425|Homo sapiens
phosphoribosylaminoimidazole carboxylase,
phosphoribosylaminoimidazole succinoc protein.
Length = 425
Score = 241 bits (590), Expect = 2e-63
Identities = 118/209 (56%), Positives = 149/209 (71%), Gaps = 2/209 (0%)
Frame = -1
Query: 783 SWRLWPSGDKRLMVDKQVYRNLTTVTAADLDTVKRNFAWVKDQLDFL-KPTIHHKVVVFM 607
SWRLWPSGD+ DKQ YR+L VT L VK+NF WV ++++ L K +VVV M
Sbjct: 213 SWRLWPSGDRSQQKDKQSYRDLKEVTPEGLQMVKKNFEWVAERVELLLKSESQCRVVVLM 272
Query: 606 GSPADQEHCQKIAKAARELGLDVDLRVTSAHKATEETLRIMQQYEDTHGALVFIAVAGRS 427
GS +D HC+KI KA G+ +LRVTSAHK +ETLRI +YE VF+AVAGRS
Sbjct: 273 GSTSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRS 332
Query: 426 NGLGPVLSGNTSYPVINCPP-PSDKLVQDIWSSLSVPSGLGCATVIYPDSAALMAAQIIG 250
NGLGPV+SGNT+YPVI+CPP D VQD+WSSL +PSGLGC+TV+ P+ +A AAQI G
Sbjct: 333 NGLGPVMSGNTAYPVISCPPLTPDWGVQDVWSSLRLPSGLGCSTVLSPEGSAQFAAQIFG 392
Query: 249 LQDYLVWGRLRSKQLDMAHSLRQADKKLR 163
L ++LVW +LR+ L+ SL+QADKK+R
Sbjct: 393 LSNHLVWSKLRASILNTWISLKQADKKIR 421
>BC019255-1|AAH19255.1| 425|Homo sapiens
phosphoribosylaminoimidazole carboxylase,
phosphoribosylaminoimidazole succinoc protein.
Length = 425
Score = 241 bits (590), Expect = 2e-63
Identities = 118/209 (56%), Positives = 149/209 (71%), Gaps = 2/209 (0%)
Frame = -1
Query: 783 SWRLWPSGDKRLMVDKQVYRNLTTVTAADLDTVKRNFAWVKDQLDFL-KPTIHHKVVVFM 607
SWRLWPSGD+ DKQ YR+L VT L VK+NF WV ++++ L K +VVV M
Sbjct: 213 SWRLWPSGDRSQQKDKQSYRDLKEVTPEGLQMVKKNFEWVAERVELLLKSESQCRVVVLM 272
Query: 606 GSPADQEHCQKIAKAARELGLDVDLRVTSAHKATEETLRIMQQYEDTHGALVFIAVAGRS 427
GS +D HC+KI KA G+ +LRVTSAHK +ETLRI +YE VF+AVAGRS
Sbjct: 273 GSTSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRS 332
Query: 426 NGLGPVLSGNTSYPVINCPP-PSDKLVQDIWSSLSVPSGLGCATVIYPDSAALMAAQIIG 250
NGLGPV+SGNT+YPVI+CPP D VQD+WSSL +PSGLGC+TV+ P+ +A AAQI G
Sbjct: 333 NGLGPVMSGNTAYPVISCPPLTPDWGVQDVWSSLRLPSGLGCSTVLSPEGSAQFAAQIFG 392
Query: 249 LQDYLVWGRLRSKQLDMAHSLRQADKKLR 163
L ++LVW +LR+ L+ SL+QADKK+R
Sbjct: 393 LSNHLVWSKLRASILNTWISLKQADKKIR 421
>BC010273-1|AAH10273.1| 425|Homo sapiens
phosphoribosylaminoimidazole carboxylase,
phosphoribosylaminoimidazole succinoc protein.
Length = 425
Score = 241 bits (590), Expect = 2e-63
Identities = 118/209 (56%), Positives = 149/209 (71%), Gaps = 2/209 (0%)
Frame = -1
Query: 783 SWRLWPSGDKRLMVDKQVYRNLTTVTAADLDTVKRNFAWVKDQLDFL-KPTIHHKVVVFM 607
SWRLWPSGD+ DKQ YR+L VT L VK+NF WV ++++ L K +VVV M
Sbjct: 213 SWRLWPSGDRSQQKDKQSYRDLKEVTPEGLQMVKKNFEWVAERVELLLKSESQCRVVVLM 272
Query: 606 GSPADQEHCQKIAKAARELGLDVDLRVTSAHKATEETLRIMQQYEDTHGALVFIAVAGRS 427
GS +D HC+KI KA G+ +LRVTSAHK +ETLRI +YE VF+AVAGRS
Sbjct: 273 GSTSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRS 332
Query: 426 NGLGPVLSGNTSYPVINCPP-PSDKLVQDIWSSLSVPSGLGCATVIYPDSAALMAAQIIG 250
NGLGPV+SGNT+YPVI+CPP D VQD+WSSL +PSGLGC+TV+ P+ +A AAQI G
Sbjct: 333 NGLGPVMSGNTAYPVISCPPLTPDWGVQDVWSSLRLPSGLGCSTVLSPEGSAQFAAQIFG 392
Query: 249 LQDYLVWGRLRSKQLDMAHSLRQADKKLR 163
L ++LVW +LR+ L+ SL+QADKK+R
Sbjct: 393 LSNHLVWSKLRASILNTWISLKQADKKIR 421
>BC050477-1|AAH50477.1| 904|Homo sapiens zinc finger protein 598
protein.
Length = 904
Score = 30.3 bits (65), Expect = 8.2
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -1
Query: 417 GPVLSGNTSYPVINCPPPSDKLVQDIWSSLSVPSGLGCATVIYPDSAAL 271
GP G P PPPS KL + + SLS + C+T P L
Sbjct: 420 GPAAPGCVGVPGA-LPPPSPKLKDEDFPSLSASTSSSCSTAATPGPVGL 467
>BC041015-1|AAH41015.1| 523|Homo sapiens ZNF598 protein protein.
Length = 523
Score = 30.3 bits (65), Expect = 8.2
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -1
Query: 417 GPVLSGNTSYPVINCPPPSDKLVQDIWSSLSVPSGLGCATVIYPDSAAL 271
GP G P PPPS KL + + SLS + C+T P L
Sbjct: 39 GPAAPGCVGVPGA-LPPPSPKLKDEDFPSLSASTSSSCSTAATPGPVGL 86
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,482,058
Number of Sequences: 237096
Number of extensions: 2929130
Number of successful extensions: 5395
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5387
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9534535578
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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