Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10p15
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0260 - 14323503-14323603,14323751-14323990,14324212-143242...    29   4.0  

>01_03_0260 - 14323503-14323603,14323751-14323990,14324212-14324275,
            14324349-14324654,14324841-14325055,14325551-14325845,
            14325965-14326129,14326324-14327352,14333553-14333814,
            14334135-14334631,14338714-14340123
          Length = 1527

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 693  AETQGDCKTPNDEGVIVKATEFNSKTIRFTLHRE-ITDEDLWLAIMKITYV 544
            A + GD KT      ++KA E  S  + FT++R+ +T+   W  +M +  V
Sbjct: 927  ASSNGDIKTAKASSRLIKAEERASGHVSFTVYRQYMTEAWGWWGLMLVLAV 977


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,278,106
Number of Sequences: 37544
Number of extensions: 289378
Number of successful extensions: 576
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)