Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10p15
         (761 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80842-3|AAB37947.1|  325|Caenorhabditis elegans Serpentine rece...    30   2.1  
Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical pr...    29   4.8  
AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical...    29   4.8  
U80030-13|AAG24169.1|  831|Caenorhabditis elegans Hypothetical p...    28   6.3  

>U80842-3|AAB37947.1|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein48 protein.
          Length = 325

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/38 (31%), Positives = 26/38 (68%)
 Frame = +1

Query: 574 EVFVCYFAVQSESNSLRVKLSSFYDHTFIVRRLAVSLG 687
           ++ VC +A++S ++S+ + +++    TFI+R+ A  LG
Sbjct: 275 QIIVCIYALRSSASSVILVITTPPYRTFIIRKFASKLG 312


>Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = -3

Query: 606 TLHREITDEDLW-LAIMKITYVFKELSSSLENK*KGLMLKFKKHKRNISVAIAYTKKIAF 430
           T+   +TDE+L+ +A+    Y+   L  ++ N     ++   K  RN++     +   A 
Sbjct: 59  TVFFSMTDEELFEIALPGFLYLTVFLVGTIGNSMVIFVVNRFKRMRNVTNIFLASLSTAD 118

Query: 429 EILIWFNIKFSFLKRLS 379
             LIWF +   F+K +S
Sbjct: 119 LCLIWFCVPIMFMKYMS 135


>AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = -3

Query: 606 TLHREITDEDLW-LAIMKITYVFKELSSSLENK*KGLMLKFKKHKRNISVAIAYTKKIAF 430
           T+   +TDE+L+ +A+    Y+   L  ++ N     ++   K  RN++     +   A 
Sbjct: 59  TVFFSMTDEELFEIALPGFLYLTVFLVGTIGNSMVIFVVNRFKRMRNVTNIFLASLSTAD 118

Query: 429 EILIWFNIKFSFLKRLS 379
             LIWF +   F+K +S
Sbjct: 119 LCLIWFCVPIMFMKYMS 135


>U80030-13|AAG24169.1|  831|Caenorhabditis elegans Hypothetical
           protein K12D9.12 protein.
          Length = 831

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 380 ERRFKKENFMLNQINISNAIFLV*AMATLMFRLCFLNFNINPFYLFSK 523
           E+ FKK NF++  + I N  +   +  T  F     NF+ + + LF K
Sbjct: 416 EKAFKKMNFLVGGLRIENTKYTSLSFITTRFPNGPFNFSCSDYGLFIK 463


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,425,209
Number of Sequences: 27780
Number of extensions: 308508
Number of successful extensions: 633
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)