Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10p14
         (320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    25   2.1  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    25   2.1  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    24   5.0  
SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar...    24   6.6  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    23   8.7  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    23   8.7  

>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 181 LYLLSMLFQKPFYRYMWSPW 240
           + ++ +LF  PF  Y WS W
Sbjct: 217 IIIVQILFSIPFLAYFWSYW 236


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 85  LSITASNYITMILHLFS**QLESL 14
           L I AS Y+T I+H F+  +L+SL
Sbjct: 29  LGIDASFYLTQIIHSFTPQELQSL 52


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 237 RRPHISIKRFLEKHGK 190
           ++   S++R+LEKHGK
Sbjct: 91  KQKRASLRRYLEKHGK 106


>SPAC19D5.06c |din1||Dhp1p-interacting protein
           Din1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 137 CSEDNTERLETSEVLPDFEHHC 72
           CS D  E+ +  +V+PD E +C
Sbjct: 162 CSRDQIEQRDNQDVVPD-EQYC 182


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 212 GFWKSMERRYRVILTRDVFEVLENNCSEDNTERLETSEVLPDFEHHCKQL 63
           G W    R+Y  IL R VF  L      +    LE SE++     H + +
Sbjct: 189 GLWNEAARQYEDILNRPVF--LSAKRKSNYQIWLEFSELVVQHPDHTQNI 236


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +1

Query: 214 FYRYMWSPW 240
           + R+MWSPW
Sbjct: 420 YVRFMWSPW 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,164,519
Number of Sequences: 5004
Number of extensions: 19883
Number of successful extensions: 58
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)