Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10p14
         (320 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22295| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.4  
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_15639| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.9  

>SB_22295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 248 INCQGDHIYL*KGFWKSMERRYRVILTR 165
           INC GD  +  + +W S ER++ + + +
Sbjct: 288 INCPGDDAFSIRDYWGSEERKFPIAVNQ 315


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 148 KTSNTSRVKITLYLLSM-LFQKPFYRYMWSPWQ 243
           K  N S++++T   LS+ +F+  ++ Y W PWQ
Sbjct: 22  KALNFSKMQLTPSRLSLWVFRNVYFEY-WEPWQ 53


>SB_15639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = -1

Query: 239 QGDHIYL*KGFWKSMERRYRVILTRDVFEVLENNC---SEDNTERLETSEVLPDFEHHCK 69
           Q   +YL   ++K  E   RV+ TRD+  V+E +    S+  T R+E      +F    +
Sbjct: 25  QHHFMYLVNYYYKFEENPRRVLCTRDLVYVVEQDLLGNSQTPTGRVEADTASREFNSRTE 84

Query: 68  QLYYHD 51
            +   D
Sbjct: 85  WMLRRD 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,006,695
Number of Sequences: 59808
Number of extensions: 129303
Number of successful extensions: 312
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 425519554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)