Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10p14
(320 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC110833-1|AAI10834.1| 952|Homo sapiens POLR1B protein protein. 28 5.4
AK128044-1|BAC87247.1| 1135|Homo sapiens protein ( Homo sapiens ... 28 5.4
AK022533-1|BAB14082.1| 1079|Homo sapiens protein ( Homo sapiens ... 28 5.4
AC012442-2|AAX81999.1| 1135|Homo sapiens unknown protein. 28 5.4
BC041852-1|AAH41852.1| 1246|Homo sapiens VPS13A protein protein. 28 7.2
AL359204-2|CAI39538.1| 3174|Homo sapiens vacuolar protein sortin... 28 7.2
AL359204-1|CAI39537.1| 3095|Homo sapiens vacuolar protein sortin... 28 7.2
AL353710-2|CAH74106.1| 3174|Homo sapiens vacuolar protein sortin... 28 7.2
AL353710-1|CAH74105.1| 3095|Homo sapiens vacuolar protein sortin... 28 7.2
AL158159-2|CAI40936.1| 3174|Homo sapiens vacuolar protein sortin... 28 7.2
AL158159-1|CAI40935.1| 3095|Homo sapiens vacuolar protein sortin... 28 7.2
AJ626859-1|CAF25186.1| 3069|Homo sapiens chorein 1D protein. 28 7.2
AJ608769-1|CAE75581.1| 3135|Homo sapiens chorein 2A protein. 28 7.2
AF337532-1|AAK61861.1| 3174|Homo sapiens chorea-acanthocytosis p... 28 7.2
AB054005-1|BAB59128.1| 3095|Homo sapiens chorein protein. 28 7.2
AB023203-1|BAA76830.1| 1458|Homo sapiens KIAA0986 protein protein. 28 7.2
AL110277-1|CAB53712.1| 561|Homo sapiens hypothetical protein pr... 27 9.5
>BC110833-1|AAI10834.1| 952|Homo sapiens POLR1B protein protein.
Length = 952
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 176 ILTRDVFEVLENNCSEDNTERLETSEVL 93
++TR +F + + C EDN + L EVL
Sbjct: 348 LMTRKLFALAKGGCMEDNPDSLVNQEVL 375
>AK128044-1|BAC87247.1| 1135|Homo sapiens protein ( Homo sapiens
cDNA FLJ46164 fis, clone TESTI4002799, highly similar
to DNA-directed RNA polymerase I 135 kDa polypeptide (EC
2.7.7.6). ).
Length = 1135
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 176 ILTRDVFEVLENNCSEDNTERLETSEVL 93
++TR +F + + C EDN + L EVL
Sbjct: 348 LMTRKLFALAKGECMEDNPDSLVNQEVL 375
>AK022533-1|BAB14082.1| 1079|Homo sapiens protein ( Homo sapiens
cDNA FLJ12471 fis, clone NT2RM1000894, highly similar to
DNA-DIRECTED RNA POLYMERASE I 135 KD POLYPEPTIDE (EC
2.7.7.6). ).
Length = 1079
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 176 ILTRDVFEVLENNCSEDNTERLETSEVL 93
++TR +F + + C EDN + L EVL
Sbjct: 292 LMTRKLFALAKGECMEDNPDSLVNQEVL 319
>AC012442-2|AAX81999.1| 1135|Homo sapiens unknown protein.
Length = 1135
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 176 ILTRDVFEVLENNCSEDNTERLETSEVL 93
++TR +F + + C EDN + L EVL
Sbjct: 348 LMTRKLFALAKGECMEDNPDSLVNQEVL 375
>BC041852-1|AAH41852.1| 1246|Homo sapiens VPS13A protein protein.
Length = 1246
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -1
Query: 215 KGFWKSMERRYRVILTRDVFEVLENNCSEDNTERLETSEV--LPDFEHHCKQLYYHDIA 45
K WK M ++ L R+ E E++ SED +L+T+ L H+ K L H IA
Sbjct: 714 KARWKPMSVKHTEKLEREFKEYTESSPSEDKVIQLDTNVPVRLTPTGHNMKILQPHVIA 772
>AL359204-2|CAI39538.1| 3174|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3174
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -1
Query: 215 KGFWKSMERRYRVILTRDVFEVLENNCSEDNTERLETSEV--LPDFEHHCKQLYYHDIA 45
K WK M ++ L R+ E E++ SED +L+T+ L H+ K L H IA
Sbjct: 2563 KARWKPMSVKHTEKLEREFKEYTESSPSEDKVIQLDTNVPVRLTPTGHNMKILQPHVIA 2621
>AL359204-1|CAI39537.1| 3095|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3095
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -1
Query: 215 KGFWKSMERRYRVILTRDVFEVLENNCSEDNTERLETSEV--LPDFEHHCKQLYYHDIA 45
K WK M ++ L R+ E E++ SED +L+T+ L H+ K L H IA
Sbjct: 2563 KARWKPMSVKHTEKLEREFKEYTESSPSEDKVIQLDTNVPVRLTPTGHNMKILQPHVIA 2621
>AL353710-2|CAH74106.1| 3174|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3174
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -1
Query: 215 KGFWKSMERRYRVILTRDVFEVLENNCSEDNTERLETSEV--LPDFEHHCKQLYYHDIA 45
K WK M ++ L R+ E E++ SED +L+T+ L H+ K L H IA
Sbjct: 2563 KARWKPMSVKHTEKLEREFKEYTESSPSEDKVIQLDTNVPVRLTPTGHNMKILQPHVIA 2621
>AL353710-1|CAH74105.1| 3095|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3095
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -1
Query: 215 KGFWKSMERRYRVILTRDVFEVLENNCSEDNTERLETSEV--LPDFEHHCKQLYYHDIA 45
K WK M ++ L R+ E E++ SED +L+T+ L H+ K L H IA
Sbjct: 2563 KARWKPMSVKHTEKLEREFKEYTESSPSEDKVIQLDTNVPVRLTPTGHNMKILQPHVIA 2621
>AL158159-2|CAI40936.1| 3174|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3174
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -1
Query: 215 KGFWKSMERRYRVILTRDVFEVLENNCSEDNTERLETSEV--LPDFEHHCKQLYYHDIA 45
K WK M ++ L R+ E E++ SED +L+T+ L H+ K L H IA
Sbjct: 2563 KARWKPMSVKHTEKLEREFKEYTESSPSEDKVIQLDTNVPVRLTPTGHNMKILQPHVIA 2621
>AL158159-1|CAI40935.1| 3095|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3095
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -1
Query: 215 KGFWKSMERRYRVILTRDVFEVLENNCSEDNTERLETSEV--LPDFEHHCKQLYYHDIA 45
K WK M ++ L R+ E E++ SED +L+T+ L H+ K L H IA
Sbjct: 2563 KARWKPMSVKHTEKLEREFKEYTESSPSEDKVIQLDTNVPVRLTPTGHNMKILQPHVIA 2621
>AJ626859-1|CAF25186.1| 3069|Homo sapiens chorein 1D protein.
Length = 3069
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -1
Query: 215 KGFWKSMERRYRVILTRDVFEVLENNCSEDNTERLETSEV--LPDFEHHCKQLYYHDIA 45
K WK M ++ L R+ E E++ SED +L+T+ L H+ K L H IA
Sbjct: 2563 KARWKPMSVKHTEKLEREFKEYTESSPSEDKVIQLDTNVPVRLTPTGHNMKILQPHVIA 2621
>AJ608769-1|CAE75581.1| 3135|Homo sapiens chorein 2A protein.
Length = 3135
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -1
Query: 215 KGFWKSMERRYRVILTRDVFEVLENNCSEDNTERLETSEV--LPDFEHHCKQLYYHDIA 45
K WK M ++ L R+ E E++ SED +L+T+ L H+ K L H IA
Sbjct: 2524 KARWKPMSVKHTEKLEREFKEYTESSPSEDKVIQLDTNVPVRLTPTGHNMKILQPHVIA 2582
>AF337532-1|AAK61861.1| 3174|Homo sapiens chorea-acanthocytosis
protein.
Length = 3174
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -1
Query: 215 KGFWKSMERRYRVILTRDVFEVLENNCSEDNTERLETSEV--LPDFEHHCKQLYYHDIA 45
K WK M ++ L R+ E E++ SED +L+T+ L H+ K L H IA
Sbjct: 2563 KARWKPMSVKHTEKLEREFKEYTESSPSEDKVIQLDTNVPVRLTPTGHNMKILQPHVIA 2621
>AB054005-1|BAB59128.1| 3095|Homo sapiens chorein protein.
Length = 3095
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -1
Query: 215 KGFWKSMERRYRVILTRDVFEVLENNCSEDNTERLETSEV--LPDFEHHCKQLYYHDIA 45
K WK M ++ L R+ E E++ SED +L+T+ L H+ K L H IA
Sbjct: 2563 KARWKPMSVKHTEKLEREFKEYTESSPSEDKVIQLDTNVPVRLTPTGHNMKILQPHVIA 2621
>AB023203-1|BAA76830.1| 1458|Homo sapiens KIAA0986 protein protein.
Length = 1458
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -1
Query: 215 KGFWKSMERRYRVILTRDVFEVLENNCSEDNTERLETSEV--LPDFEHHCKQLYYHDIA 45
K WK M ++ L R+ E E++ SED +L+T+ L H+ K L H IA
Sbjct: 926 KARWKPMSVKHTEKLEREFKEYTESSPSEDKVIQLDTNVPVRLTPTGHNMKILQPHVIA 984
>AL110277-1|CAB53712.1| 561|Homo sapiens hypothetical protein
protein.
Length = 561
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 293 CTSKKSTISFN*INKINCQGDH 228
C K ++S+N INK +C+ DH
Sbjct: 39 CLVAKLSVSYNFINKFHCKMDH 60
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,938,051
Number of Sequences: 237096
Number of extensions: 576435
Number of successful extensions: 819
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1569468906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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