Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10p14
         (320 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   2.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   3.7  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   3.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   3.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   4.8  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    20   6.4  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    20   6.4  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    20   6.4  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    20   6.4  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    20   6.4  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = -1

Query: 197 MERRYRVILTRDVFEVLENNCSEDNTERLETSEVLPDFEHHCKQLY 60
           M R+Y V  T  +        ++D+       E + D  H C+Q+Y
Sbjct: 423 MARKYDV-QTDSIIFANNQPYTKDSYTVAGMGETIEDLLHFCRQMY 467


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 113 LETSEVLPDFEHHC 72
           L+  ++L DFEH C
Sbjct: 330 LQLQDLLGDFEHPC 343


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 113 LETSEVLPDFEHHC 72
           L+  ++L DFEH C
Sbjct: 245 LQLQDLLGDFEHPC 258


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 113 LETSEVLPDFEHHC 72
           L+  ++L DFEH C
Sbjct: 564 LQLQDLLGDFEHPC 577


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -1

Query: 89  DFEHHCKQLYYHDI 48
           ++ ++CK+LYY+ I
Sbjct: 346 NYNNNCKKLYYNII 359


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 5/12 (41%), Positives = 11/12 (91%)
 Frame = -1

Query: 89  DFEHHCKQLYYH 54
           ++ ++CK+LYY+
Sbjct: 99  NYNNNCKKLYYN 110


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 5/12 (41%), Positives = 11/12 (91%)
 Frame = -1

Query: 89  DFEHHCKQLYYH 54
           ++ ++CK+LYY+
Sbjct: 104 NYNNNCKKLYYN 115


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 5/12 (41%), Positives = 11/12 (91%)
 Frame = -1

Query: 89  DFEHHCKQLYYH 54
           ++ ++CK+LYY+
Sbjct: 104 NYNNNCKKLYYN 115


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 5/12 (41%), Positives = 11/12 (91%)
 Frame = -1

Query: 89  DFEHHCKQLYYH 54
           ++ ++CK+LYY+
Sbjct: 104 NYNNNCKKLYYN 115


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 5/12 (41%), Positives = 11/12 (91%)
 Frame = -1

Query: 89  DFEHHCKQLYYH 54
           ++ ++CK+LYY+
Sbjct: 104 NYNNNCKKLYYN 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,092
Number of Sequences: 438
Number of extensions: 1245
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)