Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10p13
(791 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 246 1e-65
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 244 8e-65
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.2
09_06_0103 + 20873310-20873382,20873530-20873735 29 5.6
06_03_0543 + 21967787-21970261 29 5.6
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.4
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 28 9.8
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 9.8
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 246 bits (603), Expect = 1e-65
Identities = 111/177 (62%), Positives = 140/177 (79%)
Frame = -2
Query: 790 DGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRF 611
DG ++INL +TWEKL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR
Sbjct: 48 DGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRH 107
Query: 610 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPC 431
TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP
Sbjct: 108 TPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPA 167
Query: 430 NTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQ 260
N K +SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++A Q
Sbjct: 168 NNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 244 bits (596), Expect = 8e-65
Identities = 109/173 (63%), Positives = 137/173 (79%)
Frame = -2
Query: 790 DGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRF 611
DG ++INL +TWEKL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR
Sbjct: 48 DGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRH 107
Query: 610 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPC 431
TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP
Sbjct: 108 TPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPA 167
Query: 430 NTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 272
N K SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++
Sbjct: 168 NNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 152 TRCSSCFWSTPCSRRMVCPGTR*VEHN 72
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -1
Query: 152 TRCSSCFWSTPCSRRMVCPGTR 87
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -1
Query: 653 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 546
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -2
Query: 403 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 314
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 152 TRCSSCFWSTPCSRRMVCPGTR*VEHN 72
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +2
Query: 302 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 418
V + Q NIP LVT TTK + F PPH +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 788 WYPCDQLASYLGKTCSGCSCCRSHREP 708
++PC +GKT S C + HR P
Sbjct: 615 YHPCQPTVRLMGKTVSVCERSKEHRVP 641
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,582,865
Number of Sequences: 37544
Number of extensions: 464920
Number of successful extensions: 1296
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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