Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10p12
         (206 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81051-8|CAB02869.1|  425|Caenorhabditis elegans Hypothetical pr...    27   1.8  
U70854-4|AAP40536.1|  452|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U70854-3|AAP40537.1|  450|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>Z81051-8|CAB02869.1|  425|Caenorhabditis elegans Hypothetical
           protein C55A6.9 protein.
          Length = 425

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -3

Query: 198 HFSKQSIEDVSENFVAKEYHYW 133
           H+SK+ ++ V E+FV  ++ +W
Sbjct: 185 HYSKKGVKAVEESFVFPDFDHW 206


>U70854-4|AAP40536.1|  452|Caenorhabditis elegans Hypothetical
           protein F38A5.2a protein.
          Length = 452

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 204 TVHFSKQSIEDVSENFVA 151
           T HFSK+S EDVS    A
Sbjct: 163 TAHFSKESQEDVSNTIRA 180


>U70854-3|AAP40537.1|  450|Caenorhabditis elegans Hypothetical
           protein F38A5.2b protein.
          Length = 450

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 204 TVHFSKQSIEDVSENFVA 151
           T HFSK+S EDVS    A
Sbjct: 161 TAHFSKESQEDVSNTIRA 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,531,457
Number of Sequences: 27780
Number of extensions: 40364
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 12,740,198
effective HSP length: 48
effective length of database: 11,406,758
effective search space used: 228135160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)