Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10p04
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0561 + 19485218-19485242,19485323-19486467,19487354-194874...    29   3.2  
04_04_1697 - 35454337-35454576,35454657-35454888,35455045-354552...    29   4.3  
10_02_0112 + 5385660-5385821,5386337-5386876                           28   9.9  

>07_03_0561 +
           19485218-19485242,19485323-19486467,19487354-19487476,
           19487553-19487626,19487886-19487946,19488285-19488370,
           19488795-19488864,19489026-19489122,19489342-19489481,
           19490225-19490308,19490313-19490346,19491833-19491951
          Length = 685

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -3

Query: 507 KYESIIVTIT*ITLEFLRCFVCTPLRVCYCTSRLHPNSIGI 385
           KY+ +I T + I  ++ +  +    R CYC    +PN + +
Sbjct: 274 KYDFVITTYSTIEADYRKHIMPPKTRCCYCDKLFYPNKLKV 314


>04_04_1697 -
           35454337-35454576,35454657-35454888,35455045-35455252,
           35455380-35455629,35456232-35456354
          Length = 350

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 4   YNNFSNTXRLTLIFHSATEMFCIHQTIFYFIHTT 105
           Y + S    L +I  S    FC++ +IFY IH+T
Sbjct: 226 YTHDSIASALVIIIGSGVLAFCLNFSIFYVIHST 259


>10_02_0112 + 5385660-5385821,5386337-5386876
          Length = 233

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 186 IIFKLRPGQILHLFRSNGVCICVETI 109
           I+F +  G    LF+ NGVC+C+ T+
Sbjct: 23  ILFYMIYGAQYSLFQCNGVCMCLSTL 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,155,709
Number of Sequences: 37544
Number of extensions: 307407
Number of successful extensions: 473
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)