Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10p03
         (468 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT015952-1|AAV36837.1|  544|Drosophila melanogaster SD17694p pro...    31   1.0  
AY071486-1|AAL49108.1|  364|Drosophila melanogaster RE55427p pro...    31   1.0  
AE014298-870|AAF46147.1|  544|Drosophila melanogaster CG15896-PA...    31   1.0  

>BT015952-1|AAV36837.1|  544|Drosophila melanogaster SD17694p
           protein.
          Length = 544

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 209 ERKPIFLRWGLEQWHSHIA*SYTGRLIL*AIMTPLKRQLKYKKILTIFHTSY 364
           E KPIF RW  E   S +  + TG++I   +  P++ +L   ++   +H  Y
Sbjct: 457 ELKPIFRRWQQEHQFSLVTQTQTGQII---VKEPVRHRLCAHQVADTWHVPY 505


>AY071486-1|AAL49108.1|  364|Drosophila melanogaster RE55427p
           protein.
          Length = 364

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 209 ERKPIFLRWGLEQWHSHIA*SYTGRLIL*AIMTPLKRQLKYKKILTIFHTSY 364
           E KPIF RW  E   S +  + TG++I   +  P++ +L   ++   +H  Y
Sbjct: 277 ELKPIFRRWQQEHQFSLVTQTQTGQII---VREPVRHRLCAHQVADTWHVPY 325


>AE014298-870|AAF46147.1|  544|Drosophila melanogaster CG15896-PA
           protein.
          Length = 544

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 209 ERKPIFLRWGLEQWHSHIA*SYTGRLIL*AIMTPLKRQLKYKKILTIFHTSY 364
           E KPIF RW  E   S +  + TG++I   +  P++ +L   ++   +H  Y
Sbjct: 457 ELKPIFRRWQQEHQFSLVTQTQTGQII---VKEPVRHRLCAHQVADTWHVPY 505


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,307,891
Number of Sequences: 53049
Number of extensions: 293989
Number of successful extensions: 404
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1580609772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)