Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10p02
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...   213   4e-56
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    40   6e-04
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    33   0.039
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    31   0.21 
SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyce...    30   0.49 
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    29   0.64 
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   2.6  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   3.4  
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    27   4.5  
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi...    27   4.5  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    27   4.5  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   4.5  
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    26   7.9  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    26   7.9  

>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score =  213 bits (519), Expect = 4e-56
 Identities = 90/212 (42%), Positives = 129/212 (60%)
 Frame = -2

Query: 853 CESLTCFSCGAPHHAPTDCATIRQWLTKCADDSETANYISAHTKDCPKCQICIEKNGGCN 674
           C    CF CG  +H PT C  ++ WL KC DDSETAN+I A+TK+CPKC   IEKNGGCN
Sbjct: 246 CGKQFCFGCGHDNHQPTICPLVKIWLQKCQDDSETANWIHANTKECPKCSTTIEKNGGCN 305

Query: 673 HMQCGSCRHDFCWVCLGDWKAHGSEYYECSRYKEDPNLTTDSQHAQAREALKKYLHYYER 494
           HM C  C+++FCWVCLG W  HG+ +Y C+RY+E  + +     +++R +L++YLHYY R
Sbjct: 306 HMTCKKCKYEFCWVCLGPWTEHGNNWYTCNRYEEKSSTSARDSQSKSRASLERYLHYYNR 365

Query: 493 WENHARSLKLEEQTLESLKSRINEKVMAGEGTWIDWQYLWDAAKLLKRCRXXXXXXXXXX 314
           + NH +S KL+ +  E    R+ +  +    +W++ Q+L +A  +L +CR          
Sbjct: 366 FANHEQSAKLDHELYEHTHKRMTQMQVDSNLSWVEVQFLKNAVDILFQCRQTLKWTYAFA 425

Query: 313 XYMEVGPRKELFEYQQAQLEAEIENLSWKIER 218
            Y+    + E+FE  Q  LE  +ENLS   ER
Sbjct: 426 YYLARNNQTEIFEDNQRDLELAVENLSELCER 457



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 709 CQICIEKNGGCNHMQCGSCRHDFCWVC 629
           C+IC ++  GC       C H+FC  C
Sbjct: 131 CEICYDE--GCLPFFSAECDHEFCLAC 155


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 763 DDSETANYISAHTKDCPKCQICIEKNGGCNHMQCGSCRHDFCWVC 629
           +D E   ++  + + CP C   +E+  GC HM C  C   FC++C
Sbjct: 353 NDEEAEKWVLLNGQRCPTCDRVVERIDGCCHMNC-LCGTHFCFLC 396



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 712 KCQICIEKNGGCNHMQCGSCRHDFCWVCLGDW 617
           +C +C ++  G +  Q   C H  C  CL D+
Sbjct: 173 QCNVCFDEFNGTDCFQLTRCGHVSCQSCLRDY 204


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 33.5 bits (73), Expect = 0.039
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = -2

Query: 760 DSETANYISAHTKDCPKCQICIEKNGGCNHMQCGSCRHDFCWVCLGDWKAHGSEYYECSR 581
           D E  N +    +   KC +C+E        +CG   H FCW C+  W +  SE   C  
Sbjct: 239 DLEDKNKLPFIPEGNRKCSLCMEFIHCPAATECG---HIFCWSCINGWTSKKSECPLCRA 295

Query: 580 Y 578
           +
Sbjct: 296 F 296


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -2

Query: 739  ISAHTKDCPKCQIC---IEKNGGCNHMQCGSCRHDFCWVCLGDW 617
            IS H +   +C IC   +       + +CG+CRH F   CL  W
Sbjct: 1548 ISMHFEGVEECAICYSVLSVERTLPNKRCGTCRHKFHASCLYKW 1591


>SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 90

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -2

Query: 538 QAREALKKYLHYYERWENHARSLKLEEQTLESLKSRINEKVMAGE 404
           +A+E    + H  E+      SLKL  + L+ L+SR+++K+ + E
Sbjct: 46  KAKEDFFVHQHEIEQLRKLKESLKLHREELDELESRVDKKMKSNE 90


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -2

Query: 760 DSETANYISAHTKDCPKCQICIEKNGGCNHMQCGSCRHDFCWVC 629
           + +  N+     K C  C I +   G     +CG+C H+ C+VC
Sbjct: 801 NKDDVNFSEDRKKCCALCGI-VGTEGLLVCFKCGTCVHERCYVC 843


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 20/79 (25%), Positives = 36/79 (45%)
 Frame = +2

Query: 329 ILKSISTALEKFSSIPKILPINPCTFPSHNLFVYSAFKTFQCLLF*LQRSSMIFPSFIIM 508
           I++S +  + +FSS+     I+ C+F      + S    F C L  ++ S  +      +
Sbjct: 765 IIESWTIFISRFSSV-----ISRCSFTDFE--INSILNFFFCFLHTVEPSGKLTFELAFL 817

Query: 509 QIFLQGFTCLSMLAISSQI 565
           +IF + F CL  L  S  +
Sbjct: 818 EIFYELFNCLLHLQFSKYL 836


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -2

Query: 712 KCQICIEK-NGGCNHMQCGSCRHDFCWVCLGDW 617
           +C +C +  N   +   CG+C H F   C+  W
Sbjct: 196 ECSVCTDTINPSTSIWSCGTCYHVFHLSCIRKW 228



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 366  LNFSSAV-DILFNIPILMHTTWRLVLEKNYLNISRLNLKL 250
            +N  SA+  +L +I    H TW ++  +NY+ +  LN  L
Sbjct: 962  VNDESAIFSVLDDIVDFNHLTWSILFGENYIILKPLNTDL 1001


>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = -2

Query: 562 LTTDSQ---HAQAREAL--KKYLHYYERWENHARSLKLEEQTLE 446
           LTT S    H +AR  L  K+Y HYY    +H  S+    Q+L+
Sbjct: 338 LTTGSHAISHKEARTLLSVKEYYHYYRNAYHHIDSISHVNQSLK 381


>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
           Dma1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/43 (23%), Positives = 17/43 (39%)
 Frame = -2

Query: 715 PKCQICIEKNGGCNHMQCGSCRHDFCWVCLGDWKAHGSEYYEC 587
           P+C IC+     C  +    C H + + C+         Y+ C
Sbjct: 190 PECCICLMPVLPCQALFVAPCSHSYHYKCIRPTLNESHPYFSC 232


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -2

Query: 718 CPKCQICIEKNGGCNHMQCGSCRHDFCW 635
           C   Q  +E+       QC SC + +CW
Sbjct: 575 CALVQRSLERKNMSTPSQCASCFNQYCW 602


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -2

Query: 718 CPKCQICIEKNGGCNHMQCGSCRHDFCW 635
           C   Q  +E+       QC SC   +CW
Sbjct: 547 CAMIQRSLERKNMSTPSQCSSCFEQYCW 574


>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = -2

Query: 838 CFSCGAPHHAPTDCATIRQWLTKCADDSETANYISAHTKDCP----KCQICIEKNG 683
           CF+C    H   DC   +  ++ C       + ++A +K  P    KC IC E NG
Sbjct: 79  CFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHE-NG 133


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 712 KCQICIEKNGGCNHMQCGSCRHDFCWVCL 626
           KC IC++      ++ C  C H FC  C+
Sbjct: 205 KCVICLDSP---ENLSCTPCGHIFCNFCI 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,518,292
Number of Sequences: 5004
Number of extensions: 74137
Number of successful extensions: 260
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)