Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10p02
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    25   1.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    24   2.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.4  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/38 (26%), Positives = 15/38 (39%)
 Frame = -2

Query: 751 TANYISAHTKDCPKCQICIEKNGGCNHMQCGSCRHDFC 638
           T +Y       C KC+  I  +  C  +QC     + C
Sbjct: 32  TTSYCLGCGDSCHKCKYGIAMSSACGIVQCAKGPDELC 69


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 205 GLFQPFQSSMTNSLSQLQVEPADIQIIL 288
           GL QP  ++ +NS+SQL+ E + +  IL
Sbjct: 84  GLVQPQGTTFSNSISQLRKEVSLLYRIL 111


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 472 LKLEEQTLESLKSRINEKVMAGEGTWIDWQYLWD 371
           LKL +    +LK++I    +  E +W D++  WD
Sbjct: 56  LKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLKWD 89


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -2

Query: 805 TDCATIRQWLTKCADDSETANYISAHTKDCPKCQICIEKNGGCNHMQCGSCR 650
           T C T+ +  +KC+  S   +    H++ CP  +    K  G N +  GS R
Sbjct: 353 TKCNTLERTPSKCSQTSVHYSNGQTHSQLCPTPRSTHLKVSGINRV--GSTR 402


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 472 LKLEEQTLESLKSRINEKVMAGEGTWIDWQYLWD 371
           LKL +    +LK++I    +  E +W D++  W+
Sbjct: 60  LKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWE 93


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 472 LKLEEQTLESLKSRINEKVMAGEGTWIDWQYLWD 371
           LKL +    +LK++I    +  E +W D++  W+
Sbjct: 60  LKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWE 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,464
Number of Sequences: 438
Number of extensions: 4875
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)