Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10p01
(234 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 0.33
SPAC823.10c |||mitochondrial carrier with solute carrier repeats... 24 2.3
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom... 24 2.3
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 24 2.3
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 23 4.1
SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1 |Schizo... 23 7.1
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 23 7.1
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|... 23 7.1
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 22 9.4
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc... 22 9.4
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p... 22 9.4
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.1 bits (57), Expect = 0.33
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 217 WRKSFIFAKTSRYLYFCECLNVGPRVRKCN 128
W K F+ K S++ C+ +N R KCN
Sbjct: 1499 WSKIFLGFKPSKFPELCKDINPEQRTYKCN 1528
>SPAC823.10c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 24.2 bits (50), Expect = 2.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 92 VMCPYISDGANVVALTNPRSHIKTLAEIE 178
VM IS GA A+TNP +KT ++E
Sbjct: 214 VMSGLIS-GATATAITNPFDMLKTRVQLE 241
>SPBC3B9.09 |vps36||RBZ zinc finger protein
Vps36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 467
Score = 24.2 bits (50), Expect = 2.3
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = -3
Query: 226 SPSWRKSFIFAKTSRYLYFCECLNVGPRVRKCNNIG 119
SP R S + S C +NVG + C N G
Sbjct: 85 SPKIRLSLRHVEKSWACKICTFINVGDPINPCRNCG 120
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 24.2 bits (50), Expect = 2.3
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = -3
Query: 229 GSPSWRKSFIFAKTSRYL----YFCECLNVGPRVRK 134
G P+ KS+I +K SRY Y C +VG + R+
Sbjct: 150 GIPATGKSYIGSKLSRYYNWLKYNCRFFSVGDKRRE 185
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 23.4 bits (48), Expect = 4.1
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +2
Query: 35 KILAFHRRFPVKRFFEVRKVMCPYISDGANVVALTNPRSHIK 160
++L+ + FP+ + + + +C ++S ANV SH K
Sbjct: 284 ELLSHNEYFPMMKRGFISRFLCLFVSRDANVYIGPLESSHAK 325
>SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 246
Score = 22.6 bits (46), Expect = 7.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 95 MCPYISDGANVVALTNPRSHIKTL 166
MCP N++ALT P H K +
Sbjct: 118 MCPVDEFKNNLLALTRPFPHSKII 141
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 234 DMDRHLGEKVLFLPKRVGTSI 172
++ HL + F PKRVG +I
Sbjct: 743 ELKNHLDSIIAFGPKRVGPNI 763
>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 270
Score = 22.6 bits (46), Expect = 7.1
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +2
Query: 2 TILSVFFPFNLKILAFHRRFPVKRFFEVRKV---MCPYISD 115
T+L++ FP +L H V F+ K+ +C +I D
Sbjct: 51 TVLALLFPNGFHLLLKHEGGDVSSCFKCHKIDPSICKWILD 91
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -3
Query: 157 NVGPRVRKCNNIGAV*NVGTHYLPNFKEPLYRKTAMKSQ 41
+VG + +N G ++ PN PL +++KSQ
Sbjct: 163 DVGKLLHSKDNSGLGTSISMSLRPNLARPLLTASSVKSQ 201
>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -3
Query: 106 VGTHYLPNFKEPLYRKTAMKSQ 41
+ T +PNF+ P Y K M+ +
Sbjct: 245 LATSNIPNFQPPKYAKRKMEKK 266
>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 137 TNPRSHIKTLAEIEVPTRFGKNKTFSP 217
+N +K+L EIE+P + K F P
Sbjct: 79 SNQGCAVKSLNEIEIPKVWKKLSDFEP 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,043,194
Number of Sequences: 5004
Number of extensions: 18421
Number of successful extensions: 45
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 57
effective length of database: 2,077,250
effective search space used: 41545000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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