Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10p01
(234 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0353 - 24338717-24338946,24339046-24339134,24339421-243395... 29 0.70
12_01_0386 + 3023431-3023522,3023951-3024097,3024227-3024308,302... 26 3.7
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886... 26 3.7
05_06_0214 - 26425100-26425922,26426008-26426058,26426183-264262... 26 3.7
11_08_0047 - 27991007-27991308,27991522-27991555 26 4.9
03_05_0082 - 20595935-20596039,20596103-20596189,20596468-205965... 26 4.9
07_03_0446 - 18285132-18285221,18285437-18285499,18285805-182858... 25 6.5
02_05_0162 + 26398252-26399886 25 6.5
12_02_1233 + 27224219-27225607 25 8.6
04_04_0668 - 27109038-27109183,27109401-27109504,27109784-27109851 25 8.6
02_01_0602 + 4481869-4482111,4482315-4482472,4482603-4483467 25 8.6
>05_05_0353 -
24338717-24338946,24339046-24339134,24339421-24339500,
24339768-24339902,24340231-24340461,24340540-24340634,
24340734-24340819,24341467-24341570,24341674-24341805,
24341883-24341999,24342170-24342229,24342779-24342820,
24342878-24342952,24343127-24343177,24343256-24343436,
24343548-24343594,24343710-24343775
Length = 606
Score = 28.7 bits (61), Expect = 0.70
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 143 PRSHIKTLAEIEVPTRFGKNKTFSPRWRS 229
P +H+ L E E G KT +PRW S
Sbjct: 106 PEAHLDVLVEHEESRNIGGGKTGAPRWLS 134
>12_01_0386 +
3023431-3023522,3023951-3024097,3024227-3024308,
3024801-3024842,3024930-3024989,3025430-3027109,
3027239-3027340,3027461-3027604,3027704-3027829,
3027933-3028100
Length = 880
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 119 RRLKCRDTLPSELQRTSLQENGDEKPIF 36
+ L CR+ + E TSL GDE P F
Sbjct: 303 KSLSCRNPVVHENTNTSLFHGGDEVPAF 330
>07_03_1297 +
25587445-25587502,25587646-25587740,25588426-25588629,
25588843-25588959,25589084-25589212,25589591-25589717,
25590174-25590277,25590369-25590473,25590969-25591190,
25591869-25591967
Length = 419
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -3
Query: 85 NFKEPLYRKTAMKSQYFQVKRKKHTQN 5
NF P+Y + ++ +Y Q+ +K T N
Sbjct: 375 NFTIPMYNTSKLQVRYLQIAKKSKTYN 401
>05_06_0214 -
26425100-26425922,26426008-26426058,26426183-26426256,
26426344-26426441,26426547-26426671,26426724-26426957,
26426992-26427037,26427101-26427152,26427331-26427367,
26427521-26427637,26428287-26428352,26428439-26428518,
26429102-26429311,26429650-26429739,26430093-26430182,
26430280-26430411,26430876-26431094,26431203-26431286,
26431543-26431656,26431857-26431914,26432535-26432602,
26432847-26432962,26433495-26433574,26433839-26433912
Length = 1045
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +2
Query: 101 PYISDG-ANVVALTNPRSHIKTLAEIEVPTRFGKN 202
P +SD A ++ +P+S+ + LAE++V +F +N
Sbjct: 131 PVVSDFFAKLIQRVSPKSYQQALAEVQVSQKFLEN 165
>11_08_0047 - 27991007-27991308,27991522-27991555
Length = 111
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 83 VRKVMCPYISDGANVVALTNPRSHIKTLAEIEVP 184
VRK+ + N + L NPR H+ E+ +P
Sbjct: 2 VRKIKVAPVKCCTNEIPLPNPRYHLYNCHELTIP 35
>03_05_0082 -
20595935-20596039,20596103-20596189,20596468-20596586,
20596686-20596924,20597044-20597100,20597203-20597909,
20599827-20600192
Length = 559
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +2
Query: 35 KILAFHRRFPVKRFFEVRKVMCP--YIS 112
+I A+ FP+++F + + +M P YIS
Sbjct: 222 QIFAYAANFPIQKFMQAQSIMAPSAYIS 249
>07_03_0446 -
18285132-18285221,18285437-18285499,18285805-18285867,
18286079-18286129,18286413-18286506,18286696-18286856,
18287089-18287145,18287380-18287493,18287934-18287999,
18288063-18288266,18289207-18289284,18289669-18289788,
18290425-18290491,18290635-18290735,18290820-18290936,
18292024-18292107,18292181-18292309,18292385-18292510,
18292622-18292696,18292814-18292947,18293032-18293137,
18293220-18293276,18294387-18294573,18295244-18295407,
18296129-18296353,18296538-18296744,18297043-18297375,
18297604-18297993
Length = 1220
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 23 PFNLKILAFHRRFPVKRFFEVRKVMCPYISDGA 121
PFN+ +AF+R+ +K + K P D A
Sbjct: 727 PFNIHGVAFYRKKVIKAIMAILKTTLPGCDDDA 759
>02_05_0162 + 26398252-26399886
Length = 544
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 140 NPRS--HIKTLAEIEVPTRFGKNKTFSPRWRSI 232
+PRS H++ L + P R T +PRWRS+
Sbjct: 140 SPRSLMHMQQLLSADSP-RASPRSTIAPRWRSL 171
>12_02_1233 + 27224219-27225607
Length = 462
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 74 FFEVRKVMCPYISDGANVVALTNPRSHIKTLAEIEVPTRFGKNKTFSPRW 223
F ++++ Y +D VVA RS ++ L ++V R ++ +++P W
Sbjct: 405 FHPFKEIVFLYDTD-TRVVAYHYNRSKVQDLGVLQVRERVSRSFSYTPCW 453
>04_04_0668 - 27109038-27109183,27109401-27109504,27109784-27109851
Length = 105
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = -3
Query: 106 VGTHYLPNFKEPLYRKTAMKSQYFQVKRKKHTQN 5
+G HY KEP Y +T S R T++
Sbjct: 56 LGGHYASICKEPNYERTTEASHILSTSRTSKTED 89
>02_01_0602 + 4481869-4482111,4482315-4482472,4482603-4483467
Length = 421
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -2
Query: 125 HWRRLKCRDTLPSELQRTSLQENGDEKP 42
HWRR C + + + TS+ NG+ P
Sbjct: 370 HWRRFSCDEDVWCIKKITSVAANGNAAP 397
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,430,130
Number of Sequences: 37544
Number of extensions: 110129
Number of successful extensions: 256
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 14,793,348
effective HSP length: 56
effective length of database: 12,690,884
effective search space used: 266508564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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