Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10p01
(234 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 25 0.16
M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee homeobox-... 23 0.65
DQ485319-1|ABF21078.1| 175|Apis mellifera icarapin variant 2 pr... 20 3.5
DQ485318-1|ABF21077.1| 223|Apis mellifera icarapin variant 1 pr... 20 3.5
AY939856-1|AAX33236.1| 223|Apis mellifera venom carbohydrate-ri... 20 3.5
AY897570-1|AAW81036.1| 223|Apis mellifera venom protein 2 protein. 20 3.5
AY526236-1|AAS20469.1| 85|Apis mellifera epoxide hydrolase pro... 20 3.5
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 20 3.5
DQ435325-1|ABD92640.1| 160|Apis mellifera OBP7 protein. 19 6.0
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 19 6.0
AF023619-1|AAC39040.1| 355|Apis mellifera arginine kinase protein. 19 6.0
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 19 8.0
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 24.6 bits (51), Expect = 0.16
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 127 NIGAV*NVGTHYLPNFKEPL 68
++GAV VGT P F+EPL
Sbjct: 456 DLGAVATVGTTVAPCFEEPL 475
>M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H40. ).
Length = 74
Score = 22.6 bits (46), Expect = 0.65
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3
Query: 193 KTSRYLYFCECLNV 152
KT+RYL CE LN+
Sbjct: 28 KTTRYLSVCERLNL 41
>DQ485319-1|ABF21078.1| 175|Apis mellifera icarapin variant 2
precursor protein.
Length = 175
Score = 20.2 bits (40), Expect = 3.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 179 VPTRFGKNKTFSPRWRSI 232
+PT GKN+T + RS+
Sbjct: 138 LPTLIGKNETSTQSSRSV 155
>DQ485318-1|ABF21077.1| 223|Apis mellifera icarapin variant 1
precursor protein.
Length = 223
Score = 20.2 bits (40), Expect = 3.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 179 VPTRFGKNKTFSPRWRSI 232
+PT GKN+T + RS+
Sbjct: 186 LPTLIGKNETSTQSSRSV 203
>AY939856-1|AAX33236.1| 223|Apis mellifera venom carbohydrate-rich
protein precursor protein.
Length = 223
Score = 20.2 bits (40), Expect = 3.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 179 VPTRFGKNKTFSPRWRSI 232
+PT GKN+T + RS+
Sbjct: 186 LPTLIGKNETSTQSSRSV 203
>AY897570-1|AAW81036.1| 223|Apis mellifera venom protein 2 protein.
Length = 223
Score = 20.2 bits (40), Expect = 3.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 179 VPTRFGKNKTFSPRWRSI 232
+PT GKN+T + RS+
Sbjct: 186 LPTLIGKNETSTQSSRSV 203
>AY526236-1|AAS20469.1| 85|Apis mellifera epoxide hydrolase
protein.
Length = 85
Score = 20.2 bits (40), Expect = 3.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 234 DMDRHLGEKVLFLPKRVGTSISASVLMW 151
DM EK++ L + TS++ S L W
Sbjct: 12 DMAVLFPEKIIGLHNNMCTSLNLSNLFW 39
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 20.2 bits (40), Expect = 3.5
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 125 VVALTNPRSHIKTLAEIEVPTRFGKNKTFSPR 220
+ A T+ S L E+ P R KNK PR
Sbjct: 410 IQAATSSVSDDLYLLELGFPPRSKKNKLKKPR 441
>DQ435325-1|ABD92640.1| 160|Apis mellifera OBP7 protein.
Length = 160
Score = 19.4 bits (38), Expect = 6.0
Identities = 6/14 (42%), Positives = 7/14 (50%)
Frame = -3
Query: 166 ECLNVGPRVRKCNN 125
EC+N KC N
Sbjct: 117 ECINANKSTDKCEN 130
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 19.4 bits (38), Expect = 6.0
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +2
Query: 17 FFPFNLKILAFHRRF--PVKRFFEVRKVMCPYISDGANVVALTNPRS 151
F P NLK L H F + ++++R + N + +P S
Sbjct: 568 FIPGNLKWLDIHGNFIESLGNYYKIRDSKVKTLDASHNRITELSPLS 614
>AF023619-1|AAC39040.1| 355|Apis mellifera arginine kinase protein.
Length = 355
Score = 19.4 bits (38), Expect = 6.0
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1
Query: 201 FLPKRVGTSISASV 160
F P +GT++ ASV
Sbjct: 269 FCPTNLGTTVRASV 282
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 19.0 bits (37), Expect = 8.0
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -2
Query: 101 DTLPSELQRTSLQENGDE 48
D + +E ++QENGD+
Sbjct: 354 DRIFAEYDIINIQENGDQ 371
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,159
Number of Sequences: 438
Number of extensions: 1273
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used: 3772710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
- SilkBase 1999-2023 -