Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o24
         (404 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    27   1.5  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    26   1.9  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   3.4  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    25   5.9  

>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1313

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +2

Query: 233  YKTFMSCRYVKISKYNKYFVQTKEACASKNLIFHQMEIKIISI 361
            Y+T     Y    ++N+  +      A + L+FHQ E ++I++
Sbjct: 966  YRTRPLAEYSTNGRWNQQLMTFNNTIAPRKLMFHQFEDQLITL 1008


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 309 AHLKTSSFIKWKLKLSQSFFLHIDRHI 389
           + LK++S +  K  LSQ    H+DRH+
Sbjct: 3   SELKSTSPLAVKYDLSQKIMQHLDRHL 29


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 273 NTTNTSFKRKKRAHLKTSSFIKWKLKLSQSFFLHIDRH 386
           NTT T+        L+  SFI   L  S+ FFLH+ +H
Sbjct: 170 NTTYTNSDLPASKQLE--SFISMNLSYSKVFFLHLLQH 205


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +2

Query: 245 MSCRYVKISKYNKYFVQT--KEAC 310
           MS R+V+ SKY   F QT  KE C
Sbjct: 1   MSGRFVRASKYRHIFGQTCKKELC 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,449,552
Number of Sequences: 5004
Number of extensions: 25110
Number of successful extensions: 39
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)