Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o24
         (404 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    26   0.19 
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   2.3  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    20   9.3  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    20   9.3  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    20   9.3  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    20   9.3  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.8 bits (54), Expect = 0.19
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 228 LDTKHSCRVVM*RYQNTTNTSFKRKKRAHLKTSSFIKW 341
           LD+K S R+ M    NT+  S  +K+     TS  I W
Sbjct: 362 LDSKVSARIEMNEDDNTSLVSLDKKQYTWRHTSVLIGW 399


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 138 FEFTHPSLRTIMIW 179
           F F H SL+ +++W
Sbjct: 103 FYFVHESLKNVLLW 116


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 257 YVKISKYNKYFVQTKEACASKNLIFHQMEIKIIS 358
           Y    +Y KY  ++KE    K       E KIIS
Sbjct: 50  YKNEKEYRKYRERSKERSRDKRERERSKERKIIS 83


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 257 YVKISKYNKYFVQTKEACASKNLIFHQMEIKIIS 358
           Y    +Y KY  ++KE    K       E KIIS
Sbjct: 50  YKNEKEYRKYRERSKERSRDKRERERSKERKIIS 83


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 257 YVKISKYNKYFVQTKEACASKNLIFHQMEIKIIS 358
           Y    KY KY  ++KE    +       E KIIS
Sbjct: 50  YKNERKYRKYRERSKERSRDRTERERSREPKIIS 83


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 257 YVKISKYNKYFVQTKEACASKNLIFHQMEIKIIS 358
           Y    KY KY  ++KE    +       E KIIS
Sbjct: 50  YKNERKYRKYRERSKERSRDRTERERSREPKIIS 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,082
Number of Sequences: 438
Number of extensions: 1997
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)