Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10o22
(823 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 98 1e-21
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 55 1e-08
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 50 5e-07
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 46 9e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 44 3e-05
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 44 3e-05
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 43 5e-05
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 42 8e-05
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 41 2e-04
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 41 2e-04
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 40 3e-04
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 40 3e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 39 0.001
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 37 0.003
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 37 0.004
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 36 0.007
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 36 0.007
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 35 0.016
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 35 0.016
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 34 0.021
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 34 0.028
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 33 0.037
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 32 0.086
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 32 0.11
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 31 0.26
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 30 0.35
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 30 0.35
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 30 0.35
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces... 29 0.60
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 29 0.60
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 1.1
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 28 1.4
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 27 2.4
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 27 3.2
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 27 3.2
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 4.3
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 26 5.6
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 5.6
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 25 9.8
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 98.3 bits (234), Expect = 1e-21
Identities = 60/176 (34%), Positives = 93/176 (52%), Gaps = 9/176 (5%)
Frame = -2
Query: 678 ESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAE 499
E+ P + + GL W+TT++++RDYF FG++L V RD+ TG S+GFGF+ F
Sbjct: 154 ETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKN 213
Query: 498 YEAQLRALGRRHMIDGRWCDVR--IPNGKDGSSTAHRKVFVGRCTENITAEDLREYFGSF 325
+ + + H +DG+ D + IP ++ TA K+FVG + T E+ R +F F
Sbjct: 214 PKCVNEVMSKEHHLDGKIIDPKRAIPR-EEQEKTA--KMFVGGVPGDCTEEEFRNFFNQF 270
Query: 324 GQVTDVFV------PRPFRAFSFVTFLDPEVARSLCGQDHI-IKGVSVNISTASPK 178
G+V D + RP R F FVT+ + + Q +I I G V + A+PK
Sbjct: 271 GRVLDATLMMDKDTGRP-RGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 52.0 bits (119), Expect = 1e-07
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Frame = -2
Query: 393 KVFVGRCTENITAEDLREYFGSFGQVTDVFVPRPF-----RAFSFVTFLDPEVARSLCGQ 229
K+F+G T + LR+YF FG+V D V R R F F+TF +P+ + +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 228 DHIIKGVSVNISTASPKRERSTTAASGLG 142
+H + G ++ A P+ E+ TA +G
Sbjct: 224 EHHLDGKIIDPKRAIPREEQEKTAKMFVG 252
Score = 44.8 bits (101), Expect = 1e-05
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Frame = -2
Query: 693 AFPRAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGF 514
A PR E + + + + V G+P TEE R++F+ FG +L + D TG +GFGF
Sbjct: 237 AIPREE----QEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGF 292
Query: 513 IKFAEYEAQLRALGRRHM-IDGRWCDVRIPNGKDGSSTAH 397
+ + A + + ++ I G+ +V+ K +H
Sbjct: 293 VTYENESAVEATMSQPYITIHGKPVEVKRATPKASLRDSH 332
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 55.2 bits (127), Expect = 1e-08
Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 24/189 (12%)
Frame = -2
Query: 630 LPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR--HMI 457
L W ++ + F +G ++ +V D ++G SKG+G++ F EA A+ I
Sbjct: 270 LSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEI 329
Query: 456 DGRWCDVRIPNGK----------------DGSSTAHRKVFVGRCTENITAEDLREYFGSF 325
DGR ++ + N + D S VFVG + N T +DL FG
Sbjct: 330 DGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGC 389
Query: 324 GQVTDVFVPRP-----FRAFSFVTFLDPEVARSLCGQD-HIIKGVSVNISTASPKRERST 163
G + + +P + F +VTF D + A+ + H I G + ++P+ +
Sbjct: 390 GDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPRTGGGS 449
Query: 162 TAASGLGWG 136
G G+G
Sbjct: 450 RGGRG-GFG 457
Score = 44.8 bits (101), Expect = 1e-05
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Frame = -2
Query: 651 SDLIVLG-LPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 475
SD + +G L + TE+ + F GD+ +++ D ++G KGFG++ F++ ++ + +
Sbjct: 365 SDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV 424
Query: 474 GRR-HMIDGRWC--DVRIPNGKDGSSTAHRKVFVGR 376
H I GR C D P G S R F GR
Sbjct: 425 EMNGHFIAGRPCRLDFSTPR-TGGGSRGGRGGFGGR 459
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 49.6 bits (113), Expect = 5e-07
Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 15/162 (9%)
Frame = -2
Query: 609 EAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA--------LGRRHMID 454
+A+ D FS+FG +L +V D G +KG+GF+ F E+ A L + +
Sbjct: 182 KALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV 240
Query: 453 GRWCDVRIPNGKDGSSTAH-RKVFVGRCTENITAEDLREYFGSFGQVTDVFVPRPF---- 289
G R K + A+ V++ IT ++ + FG FG++T + + +
Sbjct: 241 GHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKP 300
Query: 288 RAFSFVTFLDPEVARSLCGQ--DHIIKGVSVNISTASPKRER 169
R F FV + + E A+ + D KG + + A K ER
Sbjct: 301 RGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHER 342
Score = 35.9 bits (79), Expect = 0.007
Identities = 15/59 (25%), Positives = 33/59 (55%)
Frame = -2
Query: 651 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 475
+++ + L + TE+ D F FG++ + + +D + +GFGF+ +A +E +A+
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAV 318
Score = 33.1 bits (72), Expect = 0.049
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = -2
Query: 648 DLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 475
+L + L + +E ++ FS+FG + ++ D + G SKGFGF+ + E +A+
Sbjct: 365 NLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAV 421
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 45.6 bits (103), Expect = 9e-06
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = -2
Query: 645 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 466
+IV G+ + TEE V D F+ FG + + + D RTG KG+ I++A E +A+ +
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
Query: 465 HM 460
++
Sbjct: 72 NL 73
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 44.0 bits (99), Expect = 3e-05
Identities = 20/59 (33%), Positives = 34/59 (57%)
Frame = -2
Query: 651 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 475
+DL V G+ + E+ ++ FS FG + V++ R+ T S+GFGF+ F+ E A+
Sbjct: 101 NDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAI 159
Score = 35.5 bits (78), Expect = 0.009
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
Frame = -2
Query: 417 DGSSTAHRKVFVGRCTENITAEDLREYFGSFGQVTDVFVPR-----PFRAFSFVTFLDPE 253
+GS +FV + ++L++ F FG VT V + R R F F++F E
Sbjct: 94 EGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVE 153
Query: 252 VARSLCG--QDHIIKGVSVNISTASPKRERSTTAASGLGWGR 133
A S G +N+ A R S T +G+ R
Sbjct: 154 EATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMGYDR 195
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 44.0 bits (99), Expect = 3e-05
Identities = 22/65 (33%), Positives = 34/65 (52%)
Frame = -2
Query: 663 RPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQL 484
R + L V L T EE +RD F FG + V + +D TG +KGF F+ + + + +
Sbjct: 198 RDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAI 257
Query: 483 RALGR 469
+A R
Sbjct: 258 KARDR 262
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 43.2 bits (97), Expect = 5e-05
Identities = 27/99 (27%), Positives = 49/99 (49%)
Frame = -2
Query: 645 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 466
L V + + T+E V+ F FGD+ V ++RD + SKGFG+I++ + AL +
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQ-NRSKGFGYIQYRNPISARNALEKM 400
Query: 465 HMIDGRWCDVRIPNGKDGSSTAHRKVFVGRCTENITAED 349
+ D ++R+ G D +T + R E + ++
Sbjct: 401 NGFDLAGRNMRVCLGNDKFTTETTSSMLKRFDETLARQE 439
Score = 30.3 bits (65), Expect = 0.35
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -2
Query: 621 KTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 475
+ T + D+F G + Q+ RD +G SKG +++F ++ A+
Sbjct: 250 RLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI 298
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 42.3 bits (95), Expect = 8e-05
Identities = 29/102 (28%), Positives = 48/102 (47%)
Frame = -2
Query: 651 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 472
S L V L ++TT+ ++++F G + V++ TG KGFGF+ F + + ++A+
Sbjct: 228 SILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAME 287
Query: 471 RRHMIDGRWCDVRIPNGKDGSSTAHRKVFVGRCTENITAEDL 346
H W R+ G+D S K + R AE L
Sbjct: 288 LGH---NSW---RLEYGEDRSKRMRNKSPMARSGRFNDAESL 323
Score = 29.1 bits (62), Expect = 0.80
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Frame = -2
Query: 390 VFVGRCTENITAEDLREYFGSFGQVTDVFV-----PRPFRAFSFVTFLDPEVARSLCGQD 226
+FVG T DL+E+FG GQ+ V + + F FV F D +
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELG 289
Query: 225 HIIKGVSVNISTASPKRERSTTAASG 148
H + + R +S A SG
Sbjct: 290 HNSWRLEYGEDRSKRMRNKSPMARSG 315
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = -2
Query: 618 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 478
T + + D FS FG +L + +G+SKG+GF+ F + EA +RA
Sbjct: 395 TCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRA 441
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -2
Query: 420 KDGSSTAHRKVFVGRCTENITAEDLREYFGSFGQVTDVF 304
+D SST ++VG ++ E++ ++F +GQV +F
Sbjct: 13 EDESST----IYVGNIDSRLSDEEIIKHFSKYGQVESIF 47
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 40.7 bits (91), Expect = 2e-04
Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 21/149 (14%)
Frame = -2
Query: 645 LIVLGLPWKTTEEAVRDYFSSFGDLL--MVQVKRDT-RTG--LSKGFGFIKFAEYEAQLR 481
+ V L + T +E + F L +++ K D R G LS GFGF++F + + +
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680
Query: 480 ALGRRH--MIDGRWCDVRIPNG----------KDGSSTAHRKVFVGRCTENITAEDLREY 337
A+ + ++DG ++++ + +D S K+ + T +D++
Sbjct: 681 AMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKGTKILIKNLPFEATKKDVQSL 740
Query: 336 FGSFGQVTDVFVPRPF----RAFSFVTFL 262
G++GQ+ V VP+ F R F+F F+
Sbjct: 741 LGAYGQLRSVRVPKKFDRSARGFAFAEFV 769
Score = 35.1 bits (77), Expect = 0.012
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -2
Query: 645 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 478
L + L + E+ ++ F FG L V + D +T KGF +I F + + +RA
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRA 380
Score = 29.5 bits (63), Expect = 0.60
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 396 RKVFVGRCTENITAEDLREYFGSFGQVTDVFVP 298
+++F+ T + +DL+ FG FGQ+ V +P
Sbjct: 323 KRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMP 355
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 40.3 bits (90), Expect = 3e-04
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = -2
Query: 672 PPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYE 493
P RC + V L ++ EE + YF G + V++ RD +T L KGF +I+F +
Sbjct: 265 PQDTKRC--VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTM 322
Query: 492 AQLRA--LGRRHMIDGR 448
+A L + M +GR
Sbjct: 323 GVDKALLLNEKKMPEGR 339
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 40.3 bits (90), Expect = 3e-04
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = -2
Query: 645 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF 505
L V LP E+ +R YFS FG +L +++ R+ +TG SK + FI+F
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEF 153
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 38.7 bits (86), Expect = 0.001
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = -2
Query: 651 SDLIVLG-LPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 475
S I +G L + E+ + FS FG+ + + + RD TG SKGF F+K+ + + + A+
Sbjct: 30 SAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAV 89
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = -2
Query: 651 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 478
S L V L ++T ++ + ++FS G + V + TG ++G+GF+ F+ E RA
Sbjct: 5 STLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRA 62
Score = 35.1 bits (77), Expect = 0.012
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = -2
Query: 645 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYE 493
+ V L ++ TE+ + ++F FG L ++ +D T S G GFIKF YE
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKF-RYE 328
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 537 GLSKGFGFIKFAEYEAQLRAL 475
G SKGFGF++F ++ L AL
Sbjct: 536 GRSKGFGFMQFISHKYALMAL 556
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 36.7 bits (81), Expect = 0.004
Identities = 19/61 (31%), Positives = 35/61 (57%)
Frame = -2
Query: 411 SSTAHRKVFVGRCTENITAEDLREYFGSFGQVTDVFVPRPFRAFSFVTFLDPEVARSLCG 232
+ TA+ VFVG ++ ++ E+L+ F +FG++ V +P P + FV F++ + A
Sbjct: 298 ADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP-PGKGCGFVQFVNRQSAEIAIN 356
Query: 231 Q 229
Q
Sbjct: 357 Q 357
Score = 29.5 bits (63), Expect = 0.60
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -2
Query: 594 YFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 475
+ S + ++ D +T +S+G+GF++F + Q AL
Sbjct: 206 FASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSAL 245
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 35.9 bits (79), Expect = 0.007
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Frame = -2
Query: 603 VRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL--GRRHMIDGRWCDVRI 430
V+DYF +G LL V+V +D L + + F++F + +AL + ++DGR +RI
Sbjct: 99 VKDYFQQWGPLLHVKVLKD---WLQRPYSFVQFQNTDDASKALSEAQNTILDGR--HIRI 153
Query: 429 PNGKDGSSTAHRKVFVGRCTEN--ITAEDLREYFGSFGQVTDV 307
K +R + + IT +D+ +G+V DV
Sbjct: 154 ERAK-----VNRTIRISSAPHQPYITKKDIDNLLEPYGEVEDV 191
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 35.9 bits (79), Expect = 0.007
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = -2
Query: 657 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQL 484
R ++ + GLP T++E + Y + FG + + D T L KG+GF F E ++ L
Sbjct: 294 RTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSAL 351
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 34.7 bits (76), Expect = 0.016
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -2
Query: 645 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF 505
+ + LP E+ V + FGDLL Q+ ++ G SKGF F +F
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEF 358
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 34.7 bits (76), Expect = 0.016
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = -2
Query: 393 KVFVGRCTENITAEDLREYFGSFGQVTDVFVPRPFRAFSFVTFLDPEVARSLCG--QDHI 220
++FVGR T ED+ ++F +GQ+ D + F FV D AR + Q
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDC---KLMNGFGFVEVEDARDARDIVNDFQGKE 61
Query: 219 IKGVSVNISTASPKRER 169
G + + A +R R
Sbjct: 62 FMGSRIVVEPARGERRR 78
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 34.3 bits (75), Expect = 0.021
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = -2
Query: 645 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 478
L V L +E++ FS + L+ +V RD R G ++GFGF+ F + + L+A
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFKDSDQFLKA 86
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 33.9 bits (74), Expect = 0.028
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -2
Query: 651 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMV-QVKRDTRTGLSKGFGFIKFAEYE 493
++L V L E + D FS+ G L+ QV RD G SKG+GF+ + +E
Sbjct: 99 ANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARD-ENGRSKGYGFVSYDSFE 151
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 33.5 bits (73), Expect = 0.037
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -2
Query: 624 WKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAE 499
+ T E ++ +F+S G + V + D TG KGF +I+F+E
Sbjct: 64 YSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSE 105
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 32.3 bits (70), Expect = 0.086
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 396 RKVFVGRCTENITAEDLREYFGSFGQVTDVFVP 298
R + V T N+T E + E FG +G + +F+P
Sbjct: 99 RTILVENLTRNVTKEHIAEIFGIYGLIDHIFMP 131
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 31.9 bits (69), Expect = 0.11
Identities = 36/180 (20%), Positives = 78/180 (43%), Gaps = 13/180 (7%)
Frame = -2
Query: 651 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 472
++L V P E + FS++G+++ V+ R ++ F +++ + + AL
Sbjct: 666 TNLYVTNFPPTYDELDITKLFSAYGNVVDVRFP-SLRYNTNRRFCYVQMRKPDEAHNALQ 724
Query: 471 -RRHMIDGRW------CDVRIPNGKDGSSTAHRKVFVGRCTENITAEDLREYFGSFGQVT 313
+ +++ ++ D + G+ R+++V + +D+ +F +GQV
Sbjct: 725 LHKKLLEEKYPIQVFISDPLRRTPRSGAVYEGRELYVTNIDFKVNEKDVETFFRDYGQVE 784
Query: 312 DVFVPRPF---RAFSFV---TFLDPEVARSLCGQDHIIKGVSVNISTASPKRERSTTAAS 151
V +P+ F + F +V T D E A S G+ + +N+ + P+ T S
Sbjct: 785 SVRIPKRFNQHKGFGYVVMTTNQDAENALSAAGKQ--LGNRVLNVVLSKPRESLEKTRVS 842
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 30.7 bits (66), Expect = 0.26
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -2
Query: 390 VFVGRCTENITAEDLREYFGSFGQV 316
V+V + ENIT ++LR YF FG++
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEI 202
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 660 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDT 544
P + + V LP T + +R YF FG++L QV ++
Sbjct: 173 PNNTAVYVHQLPENITTQELRSYFLHFGEILYTQVNNNS 211
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 30.3 bits (65), Expect = 0.35
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -2
Query: 408 STAHRKVFVGRCTENITAEDLREYFGSFGQVTDVFVPRPFRAFSFVTFLD 259
S A R VF+G IT +++RE FG + + + R +FV FL+
Sbjct: 202 SGACRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTE-RNIAFVHFLN 250
Score = 29.5 bits (63), Expect = 0.60
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -2
Query: 402 AHRKVFVGRCTENITAEDLREYFGSFGQV 316
A R +++G +++T E L+E F FG++
Sbjct: 412 ASRNIYIGNADDSLTIERLKEDFEEFGEI 440
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 30.3 bits (65), Expect = 0.35
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -2
Query: 393 KVFVGRCTENITAEDLREYFGSFGQVTDV 307
+VFV + +T+E LR +F SFG+V D+
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDL 123
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 30.3 bits (65), Expect = 0.35
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = -2
Query: 411 SSTAHRKVFVGRCTENITAEDLREYFGSFGQVTDVFVPRPFRAFSFVTFLD 259
++ A R VF+G + +++ E FG FG++ + + + +FV FL+
Sbjct: 294 NTAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSK-KNIAFVHFLN 343
>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 29.5 bits (63), Expect = 0.60
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -1
Query: 337 LRLLWSSDRCVCAATL-SCIQLCDVS*PRSS--KVLVWTRSYYKRCVSKHFNSIT 182
+ ++W+SD C+ + LC P+S+ +L ++Y+RC + HF ++
Sbjct: 216 IAVVWASDECIVESIYWFSSALCSEDPPKSALLNLLKQLIAFYRRCFAVHFEFVS 270
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 29.5 bits (63), Expect = 0.60
Identities = 31/140 (22%), Positives = 60/140 (42%), Gaps = 29/140 (20%)
Frame = -2
Query: 630 LPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR--HMI 457
LP + + S + ++ D TGLS+ +GF++F+ + Q AL ++
Sbjct: 190 LPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLC 249
Query: 456 DGRWCDVRIPNGKDGSS-------------TAHRK--------------VFVGRCTENIT 358
GR + + + K +S T++R+ VFVG N++
Sbjct: 250 QGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLS 309
Query: 357 AEDLREYFGSFGQVTDVFVP 298
+DL+ F FG++ ++ +P
Sbjct: 310 EKDLQVCFQPFGRILNIKIP 329
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 28.7 bits (61), Expect = 1.1
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Frame = -2
Query: 390 VFVGRCTENITAEDLREYFGSFGQVTDVFVPRP-----FRAFSFVTFLDPE---VARSLC 235
+FVG ++ + E L+ +F GQV V +P + ++FV F++P+ ++++L
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALK 153
Query: 234 GQDHIIKGVSVNI 196
I K +NI
Sbjct: 154 FHHTIYKERKINI 166
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -2
Query: 609 EAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAE-YEA 490
+ + + FS FG + + T +SKG+GF+ F+ +EA
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEA 475
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 208 VSKHFNSITKARKVHYCSQWARLGPY 131
++K F+ + K K +C W RL PY
Sbjct: 847 INKTFSVVLKIHKTAFCPFWERLLPY 872
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 266 NVTKLNARKGRGTNTSVT*PKEPKYSLRSSAVIFS 370
N+ +L + +G TSV+ P P YS S + FS
Sbjct: 5 NLDRLRLKSRQGFETSVSKPSTPSYSTYSLSPTFS 39
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -2
Query: 564 VQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 475
++++ + R G +GFGF+ FA E Q RA+
Sbjct: 248 IKLRGEQRRG--RGFGFVSFANAEDQSRAI 275
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 393 KVFVGRCTENITAEDLREYFGSFGQVTDVFVP 298
+VFVGR + + ++R F + G V V +P
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIP 76
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 4.3
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Frame = -1
Query: 532 IQRFWLHQIRRVRSSTACIRPPTHDRRALVRCSHPERQG-RLVDGSSKGIR------RPL 374
IQR W +RR + ACI+ + + + +G +L+ G + R R
Sbjct: 730 IQRAWRSYVRRRSEAAACIQKLWNRNKVNMELERVRNEGTKLLQGKKQRRRYSILGSRKF 789
Query: 373 YGEYYS 356
YG+Y S
Sbjct: 790 YGDYLS 795
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 147 LGWGRMLGWPADAWPL 100
+G+GRMLGW +D W L
Sbjct: 297 IGFGRMLGW-SDEWQL 311
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 5.6
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = -2
Query: 396 RKVFVGRCTENITAEDLREYFGSFGQVTDV 307
++++VG + +I + DL F FG V+++
Sbjct: 5 KRIYVGGLSSSIESSDLESRFSRFGSVSNL 34
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 25.4 bits (53), Expect = 9.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 436 NIAPAPVYHVSAA*CTQLSFVLGEFDEAKTFG 531
N A P+YHV A+ C S + D AKT+G
Sbjct: 470 NGALLPIYHVDASAC---SISISLMDIAKTYG 498
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,361,625
Number of Sequences: 5004
Number of extensions: 71970
Number of successful extensions: 272
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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