Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o22
         (823 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.6  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   2.6  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   2.6  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    23   4.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   6.0  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   6.0  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   6.0  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   6.0  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   6.0  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   6.0  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   6.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.9  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   7.9  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   7.9  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   7.9  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   7.9  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 691 GTPISVGRPA 720
           GTPIS GRPA
Sbjct: 371 GTPISTGRPA 380


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 691 GTPISVGRPA 720
           GTPIS GRPA
Sbjct: 371 GTPISTGRPA 380


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 691 GTPISVGRPA 720
           GTPIS GRPA
Sbjct: 371 GTPISTGRPA 380


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 691 GTPISVGRPA 720
           GTPIS GRPA
Sbjct: 371 GTPISTGRPA 380


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 691 GTPISVGRPA 720
           GTPIS GRPA
Sbjct: 371 GTPISTGRPA 380


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 691 GTPISVGRPA 720
           GTPIS GRPA
Sbjct: 371 GTPISTGRPA 380


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 691 GTPISVGRPA 720
           GTPIS GRPA
Sbjct: 439 GTPISTGRPA 448


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 691 GTPISVGRPA 720
           GTPIS GRPA
Sbjct: 439 GTPISTGRPA 448


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 591 FSSFGDLLMVQVKRDTRTGLSKGFG 517
           F+  G+ L    K D  TGL +GFG
Sbjct: 156 FTGLGNCLTKIFKADGITGLYRGFG 180


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 591 FSSFGDLLMVQVKRDTRTGLSKGFG 517
           F+  G+ L    K D  TGL +GFG
Sbjct: 156 FTGLGNCLTKIFKADGITGLYRGFG 180


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 101 SRHPIPSSQSPTSNTSKXV 45
           SR P    +S TSNTSK V
Sbjct: 82  SRSPDSRDRSSTSNTSKTV 100


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 418 GRLVDGSSKGIRRPLYGEY 362
           G +++GSS  I    YG Y
Sbjct: 365 GNVIEGSSDSINTKFYGMY 383


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 101 SRHPIPSSQSPTSNTSKXV 45
           SR P    +S TSNTSK V
Sbjct: 82  SRSPDSRDRSNTSNTSKTV 100


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 101 SRHPIPSSQSPTSNTSKXV 45
           SR P    +S TSNTSK V
Sbjct: 82  SRSPDSRDRSNTSNTSKTV 100


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 101 SRHPIPSSQSPTSNTSKXV 45
           SR P    +S TSNTSK V
Sbjct: 82  SRSPDSRDRSNTSNTSKTV 100


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 101 SRHPIPSSQSPTSNTSKXV 45
           SR P    +S TSNTSK V
Sbjct: 82  SRSPDSRDRSNTSNTSKTV 100


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 101 SRHPIPSSQSPTSNTSKXV 45
           SR P    +S TSNTSK V
Sbjct: 82  SRSPDSRDRSNTSNTSKTV 100


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 101 SRHPIPSSQSPTSNTSKXV 45
           SR P    +S TSNTSK V
Sbjct: 82  SRSPDSRDRSNTSNTSKTV 100


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -3

Query: 86  PSSQSPTSNTSKXVPPVLHKPTLLIAF 6
           P  +SP + +    PP +HK  + + F
Sbjct: 467 PVLRSPPAFSHSRCPPEIHKSCICVRF 493


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -3

Query: 86  PSSQSPTSNTSKXVPPVLHKPTLLIAF 6
           P  +SP + +    PP +HK  + + F
Sbjct: 467 PVLRSPPAFSHSRCPPEIHKSCICVRF 493


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 101 SRHPIPSSQSPTSNTSKXV 45
           SR P    +S TSNTSK +
Sbjct: 82  SRSPDSRDKSNTSNTSKTI 100


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 101 SRHPIPSSQSPTSNTSKXV 45
           SR P    +S TSNTSK V
Sbjct: 82  SRSPGSRDRSNTSNTSKTV 100


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 101 SRHPIPSSQSPTSNTSKXV 45
           SR P    +S TSNTSK +
Sbjct: 82  SRSPDSRDRSNTSNTSKTI 100


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 101 SRHPIPSSQSPTSNTSKXV 45
           SR P    +S TSNTSK +
Sbjct: 82  SRSPDSRDRSNTSNTSKTI 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,724
Number of Sequences: 438
Number of extensions: 5500
Number of successful extensions: 27
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)