Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o19
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   4.4  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    26   7.6  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     26   7.6  
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz...    26   7.6  

>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -2

Query: 462 LRNKTLRTSKRRKVGPKANGRNTWIT 385
           + ++ L    ++ + PKANG+  W+T
Sbjct: 124 VEDRKLSDDSQKPLAPKANGKEKWVT 149


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 337 KRGQSKPL-EALLPRLMQISSRPMFKIYKRLSQETWYRNPEKV 212
           K G+++PL +     +  +S+RP+ +  +R SQ  WY+  + V
Sbjct: 283 KTGETRPLLDVSKHDVYLVSARPLEEQGERESQRLWYKTCQAV 325


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 730 NILSVPRKYIIDTGEGMPAYTPRGIRKSALN-SQLSDRVHDVS 605
           N + +PR++  DTG  +  +T       ++N +QL    H ++
Sbjct: 232 NFMGLPREFFTDTGNYVLRFTSTSAANGSVNENQLLQAAHGIA 274


>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 20/77 (25%), Positives = 30/77 (38%)
 Frame = -1

Query: 424 GWTESEWKKHMDYISQIAGPKRDFRPPPAKRGQSKPLEALLPRLMQISSRPMFKIYKRLS 245
           G  ESE KK    +    G   D      K    +P+EA + R          KIY   +
Sbjct: 108 GAIESEHKKRSVKLEFTVGADADDYSSLQKANNLEPVEADIRRARDFIEEIKGKIYYLQA 167

Query: 244 QETWYRNPEKVAPKALK 194
           +E  +RN  +   + +K
Sbjct: 168 REARFRNTNESTNERVK 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,380,855
Number of Sequences: 5004
Number of extensions: 68732
Number of successful extensions: 193
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)