Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10o19
(841 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC048093-1|AAH48093.1| 914|Homo sapiens trafficking protein, ki... 34 0.74
BC041330-1|AAH41330.1| 914|Homo sapiens trafficking protein, ki... 34 0.74
BC040668-1|AAH40668.1| 914|Homo sapiens trafficking protein, ki... 34 0.74
BC017999-1|AAH17999.1| 117|Homo sapiens TRAK2 protein protein. 33 1.3
AC007256-1|AAY24227.1| 883|Homo sapiens unknown protein. 33 1.3
AB038964-1|BAB32550.1| 914|Homo sapiens amyotrophic lateral scl... 33 1.3
AB038951-1|BAB32501.1| 914|Homo sapiens amyotrophic lateral scl... 33 1.3
AB011121-1|BAA25475.1| 469|Homo sapiens KIAA0549 protein protein. 33 1.3
AY603755-1|AAT80901.1| 3094|Homo sapiens striated muscle prefere... 31 6.9
AB037718-1|BAA92535.1| 2242|Homo sapiens KIAA1297 protein protein. 31 6.9
BC008833-1|AAH08833.1| 425|Homo sapiens coiled-coil domain cont... 30 9.1
AK000298-1|BAA91065.1| 425|Homo sapiens protein ( Homo sapiens ... 30 9.1
>BC048093-1|AAH48093.1| 914|Homo sapiens trafficking protein,
kinesin binding 2 protein.
Length = 914
Score = 33.9 bits (74), Expect = 0.74
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = -1
Query: 286 ISSRPMFKIYKRLSQETWYRNPEKVAPKALKYVISDRVKKLAVARVVPQPGA 131
++SRP + + RNP V LK + DR+K+L +ARVV PGA
Sbjct: 803 LASRPAETFLQEMYGLRHSRNPPDVGQ--LKMNLVDRLKRLGIARVVKNPGA 852
>BC041330-1|AAH41330.1| 914|Homo sapiens trafficking protein,
kinesin binding 2 protein.
Length = 914
Score = 33.9 bits (74), Expect = 0.74
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = -1
Query: 286 ISSRPMFKIYKRLSQETWYRNPEKVAPKALKYVISDRVKKLAVARVVPQPGA 131
++SRP + + RNP V LK + DR+K+L +ARVV PGA
Sbjct: 803 LASRPAETFLQEMYGLRHSRNPPDVGQ--LKMNLVDRLKRLGIARVVKNPGA 852
>BC040668-1|AAH40668.1| 914|Homo sapiens trafficking protein,
kinesin binding 2 protein.
Length = 914
Score = 33.9 bits (74), Expect = 0.74
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = -1
Query: 286 ISSRPMFKIYKRLSQETWYRNPEKVAPKALKYVISDRVKKLAVARVVPQPGA 131
++SRP + + RNP V LK + DR+K+L +ARVV PGA
Sbjct: 803 LASRPAETFLQEMYGLRHSRNPPDVGQ--LKMNLVDRLKRLGIARVVKNPGA 852
>BC017999-1|AAH17999.1| 117|Homo sapiens TRAK2 protein protein.
Length = 117
Score = 33.1 bits (72), Expect = 1.3
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = -1
Query: 286 ISSRPMFKIYKRLSQETWYRNPEKVAPKALKYVISDRVKKLAVARVVPQPGA 131
++SRP + + RNP V LK + DR+K+L +ARVV PGA
Sbjct: 6 LASRPAETFLQEMYGLRPSRNPPDVGQ--LKMNLVDRLKRLGIARVVKNPGA 55
>AC007256-1|AAY24227.1| 883|Homo sapiens unknown protein.
Length = 883
Score = 33.1 bits (72), Expect = 1.3
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = -1
Query: 286 ISSRPMFKIYKRLSQETWYRNPEKVAPKALKYVISDRVKKLAVARVVPQPGA 131
++SRP + + RNP V LK + DR+K+L +ARVV PGA
Sbjct: 772 LASRPAETFLQEMYGLRPSRNPPDVGQ--LKMNLVDRLKRLGIARVVKNPGA 821
>AB038964-1|BAB32550.1| 914|Homo sapiens amyotrophic lateral
sclerosis 2 protein.
Length = 914
Score = 33.1 bits (72), Expect = 1.3
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = -1
Query: 286 ISSRPMFKIYKRLSQETWYRNPEKVAPKALKYVISDRVKKLAVARVVPQPGA 131
++SRP + + RNP V LK + DR+K+L +ARVV PGA
Sbjct: 803 LASRPAETFLQEMYGLRPSRNPPDVGQ--LKMNLVDRLKRLGIARVVKNPGA 852
>AB038951-1|BAB32501.1| 914|Homo sapiens amyotrophic lateral
sclerosis 2 protein.
Length = 914
Score = 33.1 bits (72), Expect = 1.3
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = -1
Query: 286 ISSRPMFKIYKRLSQETWYRNPEKVAPKALKYVISDRVKKLAVARVVPQPGA 131
++SRP + + RNP V LK + DR+K+L +ARVV PGA
Sbjct: 803 LASRPAETFLQEMYGLRPSRNPPDVGQ--LKMNLVDRLKRLGIARVVKNPGA 852
>AB011121-1|BAA25475.1| 469|Homo sapiens KIAA0549 protein protein.
Length = 469
Score = 33.1 bits (72), Expect = 1.3
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = -1
Query: 286 ISSRPMFKIYKRLSQETWYRNPEKVAPKALKYVISDRVKKLAVARVVPQPGA 131
++SRP + + RNP V LK + DR+K+L +ARVV PGA
Sbjct: 358 LASRPAETFLQEMYGLRPSRNPPDVGQ--LKMNLVDRLKRLGIARVVKNPGA 407
>AY603755-1|AAT80901.1| 3094|Homo sapiens striated muscle
preferentially expressed protein protein.
Length = 3094
Score = 30.7 bits (66), Expect = 6.9
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -1
Query: 721 SVPRKYIIDTGEGMPAYTPRGIR 653
S P+ +++DTG +PA TP+G++
Sbjct: 2741 SEPKPFVLDTGTPIPASTPQGVK 2763
>AB037718-1|BAA92535.1| 2242|Homo sapiens KIAA1297 protein protein.
Length = 2242
Score = 30.7 bits (66), Expect = 6.9
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -1
Query: 721 SVPRKYIIDTGEGMPAYTPRGIR 653
S P+ +++DTG +PA TP+G++
Sbjct: 1889 SEPKPFVLDTGTPIPASTPQGVK 1911
>BC008833-1|AAH08833.1| 425|Homo sapiens coiled-coil domain
containing 49 protein.
Length = 425
Score = 30.3 bits (65), Expect = 9.1
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -1
Query: 679 PAYTPRGIRKSALNSQLSDRVHDVSWPYLRRFLILKKTYKQRFNEERLERID 524
P YT R + L + + + + W R ILK+ K E+RLE++D
Sbjct: 330 PGYT-RKLSAEELERKRQEMMENAKWREEERLNILKRHAKDEEREQRLEKLD 380
>AK000298-1|BAA91065.1| 425|Homo sapiens protein ( Homo sapiens
cDNA FLJ20291 fis, clone HEP04788. ).
Length = 425
Score = 30.3 bits (65), Expect = 9.1
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -1
Query: 679 PAYTPRGIRKSALNSQLSDRVHDVSWPYLRRFLILKKTYKQRFNEERLERID 524
P YT R + L + + + + W R ILK+ K E+RLE++D
Sbjct: 330 PGYT-RKLSAEELERKRQEMMENAKWREEERLNILKRHAKDEEREQRLEKLD 380
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,294,903
Number of Sequences: 237096
Number of extensions: 2633373
Number of successful extensions: 6530
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6527
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10593928420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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