Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o19
         (841 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78015-4|CAB01436.2|  149|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U61958-3|AAB03180.2|  149|Caenorhabditis elegans Hypothetical pr...    29   5.4  

>Z78015-4|CAB01436.2|  149|Caenorhabditis elegans Hypothetical
           protein R02D5.7 protein.
          Length = 149

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
 Frame = -1

Query: 373 AGPKRDFRPPPAK-RGQSKPLEALLPRLMQISSRPMFKIYKRLSQETWYRNPEKVAPKAL 197
           A PK++  PPP K + + KP E          S    K  K    E  Y N + + P  L
Sbjct: 79  AAPKKEEAPPPEKPKKEEKPKEKSKKSAKSKKSSKSKKDKKDGEDENGYENCQDMTPDQL 138

Query: 196 KYVISDRVKK 167
           K +     +K
Sbjct: 139 KKIAEQADEK 148


>U61958-3|AAB03180.2|  149|Caenorhabditis elegans Hypothetical
           protein C25A8.2 protein.
          Length = 149

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = -1

Query: 373 AGPKRDFRPPPAK-RGQSKPLEALLPRLMQISSRPMFKIYKRLSQETWYRNPEKVAPKAL 197
           A PK++  PPP + + + KP E          S    K  K   +E  Y N + + P  L
Sbjct: 79  AAPKKEEAPPPEEPKKEEKPKEKSKKSAKSKKSSKSKKDKKDGEEENGYENCQDMTPDQL 138

Query: 196 KYVISDRVKK 167
           K +     +K
Sbjct: 139 KKIAEQADEK 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,052,451
Number of Sequences: 27780
Number of extensions: 403245
Number of successful extensions: 1090
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)