Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o18
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    29   0.23 
SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr...    29   0.30 
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   1.2  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    26   1.6  
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    26   1.6  
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    25   3.7  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   3.7  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    24   8.5  

>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 29.1 bits (62), Expect = 0.23
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 157 LCDRHNSIDNFTEKRNEKSSHNKGTSEA 74
           +  RH +  ++T K  E++SH +GT EA
Sbjct: 496 MTQRHKNTSSWTRKMLERASHGEGTREA 523


>SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 28.7 bits (61), Expect = 0.30
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 365 DCHSKWKNKQENANLNYKY 309
           DCH  W+   E ++L+Y+Y
Sbjct: 98  DCHQDWETSDEKSSLSYEY 116


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 14/60 (23%), Positives = 26/60 (43%)
 Frame = +2

Query: 68   HSCFRGSFVMTTFLIAFFCEVVDAVMSVTETPKTFNVAFHITIVFVFSSIRPKSTNYRFK 247
            HSCF    +   F I    +++  +   T+  K FNV   +    V  S++ +  +  F+
Sbjct: 875  HSCFHLGVIPIPFQIREISQLIGEIEEFTKIAKAFNVEAILVDHKVLISLKSRDISNHFQ 934


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 220 SYRTKDEYDCYVEGYVKCFWSLCDRHNSIDNF 125
           S R K   DCY++ Y +    L +  N+ D F
Sbjct: 874 SLRRKFNIDCYLKRYERALGHLKEMENAFDEF 905


>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 193 CYVEGYVKCFWSLCDRHNSIDN 128
           C+++GYV+ FW   + H    N
Sbjct: 32  CFIKGYVRRFWMRSEDHRGTVN 53


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 145 HNSIDNFTEKRNEKSSHN 92
           HN  +  TE +NE+S HN
Sbjct: 191 HNEPEYHTESKNEESEHN 208


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 52  MCFARPFLLPRFLCYDYFS 108
           +CF  P  L  F+CY +F+
Sbjct: 203 ICFGAPLFLVIFICYIFFT 221


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 11/49 (22%), Positives = 23/49 (46%)
 Frame = +2

Query: 71  SCFRGSFVMTTFLIAFFCEVVDAVMSVTETPKTFNVAFHITIVFVFSSI 217
           S F+  F       +FF + + A+ S +    +  +A H+ ++  F S+
Sbjct: 407 SDFQIPFKTKKIFYSFFVKTLHAISSSSAAESSIALALHMLVINAFQSM 455


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,381,956
Number of Sequences: 5004
Number of extensions: 25689
Number of successful extensions: 83
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)