Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o18
         (365 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0204 - 16369800-16371758,16372260-16372331                       29   1.5  
10_02_0024 - 4314090-4314269,4314387-4314458,4315093-4315227,431...    27   6.0  
01_06_0864 - 32546696-32546803,32546881-32546961,32547134-325472...    27   6.0  
03_06_0603 + 34999083-34999703,35000092-35000177,35000400-350007...    26   7.9  

>02_03_0204 - 16369800-16371758,16372260-16372331
          Length = 676

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +2

Query: 140 VMSVTETPKTFNVAFHITIVFVFSSIRPKSTNYRFKVVI 256
           ++S T  P   N+++H+ +  ++ S+ PK  N R K ++
Sbjct: 92  MISTTLEPSYNNLSYHLKLCLLYLSVFPKGHNIRRKRIV 130


>10_02_0024 -
           4314090-4314269,4314387-4314458,4315093-4315227,
           4315290-4315383,4315797-4315855,4315944-4315980,
           4316105-4316292,4316426-4316666,4316668-4316702,
           4316761-4316949,4317069-4317217,4317340-4317685
          Length = 574

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 181 GYVKCFWSLCDRHN 140
           GYV C WS+C  H+
Sbjct: 501 GYVGCMWSICGLHD 514


>01_06_0864 -
           32546696-32546803,32546881-32546961,32547134-32547250,
           32548264-32548338,32548618-32548680,32549122-32549187,
           32549254-32549325,32549403-32549504,32549588-32549765,
           32549871-32549926,32551578-32551688,32551797-32551865,
           32551960-32552068,32552176-32552327,32552398-32552475,
           32554257-32554379,32555527-32555646,32555729-32555809,
           32555881-32556027,32556112-32556190,32557223-32557297,
           32558004-32558113,32558984-32559082,32559700-32559815,
           32559914-32560022,32560098-32560229,32560389-32560591,
           32561428-32561585,32561668-32561797,32562529-32562607,
           32562806-32562829
          Length = 1073

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 62  QGHSCFRGSFVMTTFLIAFFCEVVDAVMSVTETPKTF 172
           QG +C+  S + T + I +F +  D  +S  E  K+F
Sbjct: 177 QGATCYMNSLLQTLYHIPYFRKHSDNSVSTKELTKSF 213


>03_06_0603 +
           34999083-34999703,35000092-35000177,35000400-35000796,
           35000906-35001154,35001522-35001749,35002524-35002973,
           35003848-35003961,35004171-35004216,35004408-35004574
          Length = 785

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 214 RTKDEYDCYVEGYVKCFWSLCDR 146
           + +D+Y C   GY  C W+L DR
Sbjct: 756 KAEDDYLC---GYTNCSWALADR 775


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,856,833
Number of Sequences: 37544
Number of extensions: 132503
Number of successful extensions: 320
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)