Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10o18
(365 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D50857-1|BAA09454.1| 1865|Homo sapiens DOCK180 protein protein. 29 3.5
BX470201-1|CAH72560.2| 1865|Homo sapiens dedicator of cytokinesi... 29 3.5
BX470155-1|CAI22477.2| 1865|Homo sapiens dedicator of cytokinesi... 29 3.5
AL607029-1|CAI15329.2| 1865|Homo sapiens dedicator of cytokinesi... 29 3.5
AL390920-1|CAH73231.2| 1865|Homo sapiens dedicator of cytokinesi... 29 3.5
AL359094-1|CAH71477.2| 1865|Homo sapiens dedicator of cytokinesi... 29 3.5
AL355316-1|CAI16871.2| 1865|Homo sapiens dedicator of cytokinesi... 29 3.5
AL157711-1|CAH71463.2| 1865|Homo sapiens dedicator of cytokinesi... 29 3.5
X76562-1|CAA54061.1| 417|Homo sapiens intrinsic factor protein. 29 4.6
M63154-1|AAA66354.1| 417|Homo sapiens intrinsic factor protein. 29 4.6
BC037958-1|AAH37958.1| 417|Homo sapiens gastric intrinsic facto... 29 4.6
X12794-1|CAA31282.1| 403|Homo sapiens protein ( Human v-erbA re... 28 8.0
>D50857-1|BAA09454.1| 1865|Homo sapiens DOCK180 protein protein.
Length = 1865
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 184 EGYVKCFWSLCDRHNSIDNFTE 119
E Y++ + LCD H DN+TE
Sbjct: 1214 EMYIRYLYKLCDLHKECDNYTE 1235
>BX470201-1|CAH72560.2| 1865|Homo sapiens dedicator of cytokinesis 1
protein.
Length = 1865
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 184 EGYVKCFWSLCDRHNSIDNFTE 119
E Y++ + LCD H DN+TE
Sbjct: 1214 EMYIRYLYKLCDLHKECDNYTE 1235
>BX470155-1|CAI22477.2| 1865|Homo sapiens dedicator of cytokinesis 1
protein.
Length = 1865
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 184 EGYVKCFWSLCDRHNSIDNFTE 119
E Y++ + LCD H DN+TE
Sbjct: 1214 EMYIRYLYKLCDLHKECDNYTE 1235
>AL607029-1|CAI15329.2| 1865|Homo sapiens dedicator of cytokinesis 1
protein.
Length = 1865
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 184 EGYVKCFWSLCDRHNSIDNFTE 119
E Y++ + LCD H DN+TE
Sbjct: 1214 EMYIRYLYKLCDLHKECDNYTE 1235
>AL390920-1|CAH73231.2| 1865|Homo sapiens dedicator of cytokinesis 1
protein.
Length = 1865
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 184 EGYVKCFWSLCDRHNSIDNFTE 119
E Y++ + LCD H DN+TE
Sbjct: 1214 EMYIRYLYKLCDLHKECDNYTE 1235
>AL359094-1|CAH71477.2| 1865|Homo sapiens dedicator of cytokinesis 1
protein.
Length = 1865
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 184 EGYVKCFWSLCDRHNSIDNFTE 119
E Y++ + LCD H DN+TE
Sbjct: 1214 EMYIRYLYKLCDLHKECDNYTE 1235
>AL355316-1|CAI16871.2| 1865|Homo sapiens dedicator of cytokinesis 1
protein.
Length = 1865
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 184 EGYVKCFWSLCDRHNSIDNFTE 119
E Y++ + LCD H DN+TE
Sbjct: 1214 EMYIRYLYKLCDLHKECDNYTE 1235
>AL157711-1|CAH71463.2| 1865|Homo sapiens dedicator of cytokinesis 1
protein.
Length = 1865
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 184 EGYVKCFWSLCDRHNSIDNFTE 119
E Y++ + LCD H DN+TE
Sbjct: 1214 EMYIRYLYKLCDLHKECDNYTE 1235
>X76562-1|CAA54061.1| 417|Homo sapiens intrinsic factor protein.
Length = 417
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 114 AMRKVVITKEPRKQEWPCKTHRD 46
AM+ + +T EP K+EW CK D
Sbjct: 229 AMQALSVTPEPSKKEWNCKKTTD 251
>M63154-1|AAA66354.1| 417|Homo sapiens intrinsic factor protein.
Length = 417
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 114 AMRKVVITKEPRKQEWPCKTHRD 46
AM+ + +T EP K+EW CK D
Sbjct: 229 AMQALSVTPEPSKKEWNCKKTTD 251
>BC037958-1|AAH37958.1| 417|Homo sapiens gastric intrinsic factor
(vitamin B synthesis) protein.
Length = 417
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 114 AMRKVVITKEPRKQEWPCKTHRD 46
AM+ + +T EP K+EW CK D
Sbjct: 229 AMQALSVTPEPSKKEWNCKKTTD 251
>X12794-1|CAA31282.1| 403|Homo sapiens protein ( Human v-erbA
related ear-2 gene. ).
Length = 403
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 277 MFTKSQCNHYFKPIVRRLGSYRTKDEYDCYVE 182
+FT C +FK +RR SY + DC ++
Sbjct: 70 VFTCEGCKSFFKRTIRRNLSYTCRSNRDCQID 101
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,566,605
Number of Sequences: 237096
Number of extensions: 770935
Number of successful extensions: 1579
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1579
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2306171440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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