Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10o18
(365 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol 1,4,... 31 0.33
AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol 1,4,... 31 0.33
AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol 1,4,... 31 0.33
AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol 1,4,... 31 0.33
AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol 1,4,... 31 0.33
AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol trip... 31 0.33
AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol trip... 31 0.33
AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol trip... 31 0.33
AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol trip... 31 0.33
AF162674-1|AAF80462.1| 575|Caenorhabditis elegans CNT-like nucl... 27 3.1
AF016413-4|AAM29683.1| 454|Caenorhabditis elegans Hypothetical ... 27 3.1
AF016413-3|AAB65256.3| 555|Caenorhabditis elegans Hypothetical ... 27 3.1
Z99281-50|CAD56259.3| 837|Caenorhabditis elegans Hypothetical p... 27 5.4
Z82267-4|CAB05192.1| 285|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z75552-6|CAA99939.1| 332|Caenorhabditis elegans Hypothetical pr... 26 9.5
U88175-4|AAB42279.1| 440|Caenorhabditis elegans Hypothetical pr... 26 9.5
U49945-4|AAC47924.1| 535|Caenorhabditis elegans Hypothetical pr... 26 9.5
AF047662-5|AAC04440.1| 385|Caenorhabditis elegans Hypothetical ... 26 9.5
>AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2857
Score = 30.7 bits (66), Expect = 0.33
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -2
Query: 187 VEGYVKCFWSLCDRHNSI-DNFTEKRNEKSSHN 92
VE ++ LC+ HNS+ NF K++++++HN
Sbjct: 2039 VEPILRVLQLLCENHNSLLQNFLRKQSDRTNHN 2071
>AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2836
Score = 30.7 bits (66), Expect = 0.33
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -2
Query: 187 VEGYVKCFWSLCDRHNSI-DNFTEKRNEKSSHN 92
VE ++ LC+ HNS+ NF K++++++HN
Sbjct: 2018 VEPILRVLQLLCENHNSLLQNFLRKQSDRTNHN 2050
>AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2892
Score = 30.7 bits (66), Expect = 0.33
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -2
Query: 187 VEGYVKCFWSLCDRHNSI-DNFTEKRNEKSSHN 92
VE ++ LC+ HNS+ NF K++++++HN
Sbjct: 2074 VEPILRVLQLLCENHNSLLQNFLRKQSDRTNHN 2106
>AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2846
Score = 30.7 bits (66), Expect = 0.33
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -2
Query: 187 VEGYVKCFWSLCDRHNSI-DNFTEKRNEKSSHN 92
VE ++ LC+ HNS+ NF K++++++HN
Sbjct: 2028 VEPILRVLQLLCENHNSLLQNFLRKQSDRTNHN 2060
>AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2846
Score = 30.7 bits (66), Expect = 0.33
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -2
Query: 187 VEGYVKCFWSLCDRHNSI-DNFTEKRNEKSSHN 92
VE ++ LC+ HNS+ NF K++++++HN
Sbjct: 2028 VEPILRVLQLLCENHNSLLQNFLRKQSDRTNHN 2060
>AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform e protein.
Length = 2857
Score = 30.7 bits (66), Expect = 0.33
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -2
Query: 187 VEGYVKCFWSLCDRHNSI-DNFTEKRNEKSSHN 92
VE ++ LC+ HNS+ NF K++++++HN
Sbjct: 2039 VEPILRVLQLLCENHNSLLQNFLRKQSDRTNHN 2071
>AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform f protein.
Length = 2846
Score = 30.7 bits (66), Expect = 0.33
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -2
Query: 187 VEGYVKCFWSLCDRHNSI-DNFTEKRNEKSSHN 92
VE ++ LC+ HNS+ NF K++++++HN
Sbjct: 2028 VEPILRVLQLLCENHNSLLQNFLRKQSDRTNHN 2060
>AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform d protein.
Length = 2836
Score = 30.7 bits (66), Expect = 0.33
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -2
Query: 187 VEGYVKCFWSLCDRHNSI-DNFTEKRNEKSSHN 92
VE ++ LC+ HNS+ NF K++++++HN
Sbjct: 2018 VEPILRVLQLLCENHNSLLQNFLRKQSDRTNHN 2050
>AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform a protein.
Length = 2892
Score = 30.7 bits (66), Expect = 0.33
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -2
Query: 187 VEGYVKCFWSLCDRHNSI-DNFTEKRNEKSSHN 92
VE ++ LC+ HNS+ NF K++++++HN
Sbjct: 2074 VEPILRVLQLLCENHNSLLQNFLRKQSDRTNHN 2106
>AF162674-1|AAF80462.1| 575|Caenorhabditis elegans CNT-like
nucleoside transporter protein.
Length = 575
Score = 27.5 bits (58), Expect = 3.1
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +2
Query: 107 LIAFFCEVVDAVMSVTETPKTFNVAFHITIVFVFSSIRPKSTNYRFKVVITLRFC 271
L+AF ++D++ +T F F+I +FVFS+ R K + + +C
Sbjct: 132 LLAF--TIIDSIHDLTRLTGFFAYVFYILFMFVFSNNRMKINWSVVSSALIMHYC 184
>AF016413-4|AAM29683.1| 454|Caenorhabditis elegans Hypothetical
protein F27E11.2b protein.
Length = 454
Score = 27.5 bits (58), Expect = 3.1
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +2
Query: 107 LIAFFCEVVDAVMSVTETPKTFNVAFHITIVFVFSSIRPKSTNYRFKVVITLRFC 271
L+AF ++D++ +T F F+I +FVFS+ R K + + +C
Sbjct: 132 LLAF--TIIDSIHDLTRLTGFFAYVFYILFMFVFSNNRMKINWSVVSSALIMHYC 184
>AF016413-3|AAB65256.3| 555|Caenorhabditis elegans Hypothetical
protein F27E11.2a protein.
Length = 555
Score = 27.5 bits (58), Expect = 3.1
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +2
Query: 107 LIAFFCEVVDAVMSVTETPKTFNVAFHITIVFVFSSIRPKSTNYRFKVVITLRFC 271
L+AF ++D++ +T F F+I +FVFS+ R K + + +C
Sbjct: 132 LLAF--TIIDSIHDLTRLTGFFAYVFYILFMFVFSNNRMKINWSVVSSALIMHYC 184
>Z99281-50|CAD56259.3| 837|Caenorhabditis elegans Hypothetical
protein Y57G11C.37 protein.
Length = 837
Score = 26.6 bits (56), Expect = 5.4
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -2
Query: 319 IISTLCNFKILF--LIMFTKSQCNHYFKPIVRRLGSYRTKDEYDCYV 185
++S LC F ++F L++ + I+ L +YRT DEY+ ++
Sbjct: 389 MLSWLCYFPMIFYALMIVISDKIYRRLALILNDLENYRTDDEYEDFL 435
>Z82267-4|CAB05192.1| 285|Caenorhabditis elegans Hypothetical
protein F38C2.6 protein.
Length = 285
Score = 25.8 bits (54), Expect = 9.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 2 FYSVVHSYSKNIILKSLCVLQGHSCFRGSFVMTTFLIAFF 121
FY + ++K I S+ V SC + F +TF++AF+
Sbjct: 26 FYGKIVKFNKEAI--SITVTDLDSCVQNCFEESTFILAFW 63
>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical
protein W06A7.3f protein.
Length = 2488
Score = 25.8 bits (54), Expect = 9.5
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -2
Query: 133 DNFTEKRNEKSSHNKGTSEARMALQN 56
DN EKRNE S N TSE + L+N
Sbjct: 715 DN-AEKRNEAVSPNDETSEIKQDLEN 739
>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical
protein W06A7.3c protein.
Length = 2484
Score = 25.8 bits (54), Expect = 9.5
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -2
Query: 133 DNFTEKRNEKSSHNKGTSEARMALQN 56
DN EKRNE S N TSE + L+N
Sbjct: 715 DN-AEKRNEAVSPNDETSEIKQDLEN 739
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical
protein W06A7.3a protein.
Length = 2607
Score = 25.8 bits (54), Expect = 9.5
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -2
Query: 133 DNFTEKRNEKSSHNKGTSEARMALQN 56
DN EKRNE S N TSE + L+N
Sbjct: 715 DN-AEKRNEAVSPNDETSEIKQDLEN 739
>Z75552-6|CAA99939.1| 332|Caenorhabditis elegans Hypothetical
protein W04D2.2a protein.
Length = 332
Score = 25.8 bits (54), Expect = 9.5
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 89 FVMTTFLIAF--FCEVVDAVMSVTETPKTFNVAFHITIVFV 205
F+ +T + A C V+ VM+VTE P + H T F+
Sbjct: 240 FLQSTLICAANQVCAVIYVVMNVTEVPNWLIMFAHFTWEFI 280
>U88175-4|AAB42279.1| 440|Caenorhabditis elegans Hypothetical
protein F21F3.2 protein.
Length = 440
Score = 25.8 bits (54), Expect = 9.5
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -3
Query: 183 KATLNVFGVSVTDITASTTSQKNAMRKVVITKEPRKQEWPCKTHRDFKIIFL 28
K L + V + + K +R+ K K+ WP K R+F+ IFL
Sbjct: 18 KVMLKIEEVHLHSCGVFSNVYKGILREPYEKKIAIKKSWPEKGERNFEFIFL 69
>U49945-4|AAC47924.1| 535|Caenorhabditis elegans Hypothetical
protein C02H7.1 protein.
Length = 535
Score = 25.8 bits (54), Expect = 9.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 151 DRHNSIDNFTEKRNEKSSHNK 89
+RH S D +EK +EKSS K
Sbjct: 178 ERHKSSDRSSEKSSEKSSKEK 198
>AF047662-5|AAC04440.1| 385|Caenorhabditis elegans Hypothetical
protein T22B2.3 protein.
Length = 385
Score = 25.8 bits (54), Expect = 9.5
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -2
Query: 319 IISTLCNFKILFLIMFTKSQCNHYFKPIVRRLGSYRTKDEYDCYVE 182
++S C +F +Q NH F + R+G +RT Y C+++
Sbjct: 294 LLSVFCLILFSMQTLFFPNQ-NHEF--FLCRVGIFRTSYNYSCFID 336
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,584,350
Number of Sequences: 27780
Number of extensions: 143161
Number of successful extensions: 465
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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