Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o16
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   7.4  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   9.8  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   9.8  

>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 140

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 641 ADFVTSVYLSEQIQSINEINHYIIKLSSFG 552
           +DF T VY+S  I  +N+I H  + + S G
Sbjct: 16  SDFKTPVYISRSISILNKIFHPCMYIYSRG 45


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 253 VLYFRYCCTMVLGLALIIC*W 315
           VL F YCC+++L LA  I  W
Sbjct: 593 VLPFTYCCSIMLVLAYAIGLW 613


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 234 KFYVTISFIFQILLYNGTWIGAH-YLLMVTTQWINQINCVP 353
           +F V I  +F  L   GT      Y+L +  Q IN+IN +P
Sbjct: 142 EFLVNIFRLFFDLARKGTTKNVEFYMLDIINQLINEINTIP 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,947,105
Number of Sequences: 5004
Number of extensions: 54250
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)