Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o16
         (821 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32...    47   2e-05
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30...    39   0.006
04_04_0043 - 22330282-22330410,22330484-22330568,22330602-223307...    31   1.5  
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952...    29   4.5  

>12_01_0039 -
           319871-319914,320021-320084,320198-320263,320397-320458,
           321211-321298,321401-321461,321542-321625,322332-322630
          Length = 255

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 23/76 (30%), Positives = 42/76 (55%)
 Frame = -1

Query: 734 AFRYSXKMEEQVNQLLEEIVTEANDIEDYHCADFVTSVYLSEQIQSINEINHYIIKLSSF 555
           A   +  +E+ VN+ L  + + A+   D    DFV S +L EQ+++I +I+ Y+ +L   
Sbjct: 178 AMELALALEKLVNEKLHNLHSVASRCNDPQLTDFVESEFLEEQVEAIKKISEYVAQLRRV 237

Query: 554 GDDIHAIHNFDTSLIK 507
           G   H + +FD  L++
Sbjct: 238 GKG-HGVWHFDQKLLE 252


>11_01_0040 -
           304439-304482,304589-304652,304766-304831,305509-305640,
           305744-305804,305885-306018,306310-306654
          Length = 281

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 18/54 (33%), Positives = 31/54 (57%)
 Frame = -1

Query: 668 ANDIEDYHCADFVTSVYLSEQIQSINEINHYIIKLSSFGDDIHAIHNFDTSLIK 507
           A+   D    DFV S +L EQ+++I +I+ Y+ +L   G   H + +FD  L++
Sbjct: 226 ASRCNDPQLTDFVESEFLEEQVEAIKKISEYVAQLRRVGKG-HGVWHFDQKLLE 278


>04_04_0043 -
           22330282-22330410,22330484-22330568,22330602-22330724,
           22330839-22330879,22331081-22331137,22331530-22331583,
           22331646-22331650,22332392-22332500
          Length = 200

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -1

Query: 767 QIYLITXPLIEAFRYSXKMEEQVNQLLEEIVTEANDIEDYHCADFVTSVYLSE 609
           QIYL   P      Y  K+E+ +N++ +E++   + I    CA   T  YL+E
Sbjct: 131 QIYLAEGPSGPNKEYLFKLEDALNKIGKELLIHMSRIWQMLCASIQTLRYLAE 183


>11_03_0065 -
           9522478-9525335,9525513-9526028,9526432-9527247,
           9527440-9527767
          Length = 1505

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
 Frame = -1

Query: 785 YGELRNQIYLI-TXPLIEAFRYSXKMEEQVNQLLEEIVTEANDIEDYHCAD--FVTSVYL 615
           YGE + + +L  T P  +  RYS K EEQ   L+ + V E   + D    D   + S+  
Sbjct: 547 YGEDKPRNHLSRTCPNKDQKRYSSKYEEQERVLIIDSVNENILVCDDEIKDDESIYSIIE 606

Query: 614 SEQIQSINE 588
           ++++++INE
Sbjct: 607 TDEVETINE 615


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,015,588
Number of Sequences: 37544
Number of extensions: 257223
Number of successful extensions: 525
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)