Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o16
         (821 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin prot...    43   3e-04
AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin pro...    38   0.009
AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ...    30   2.3  
Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical p...    28   7.0  
AF038618-3|AAB92073.1|  572|Caenorhabditis elegans Hypothetical ...    28   7.0  
U29613-4|AAP82648.2|  165|Caenorhabditis elegans Hypothetical pr...    28   9.3  
U29613-3|AAC47062.2|  483|Caenorhabditis elegans Hypothetical pr...    28   9.3  
AF067617-4|AAC17557.1|  381|Caenorhabditis elegans Hypothetical ...    28   9.3  

>AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin protein
           2 protein.
          Length = 170

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 20/66 (30%), Positives = 35/66 (53%)
 Frame = -1

Query: 740 IEAFRYSXKMEEQVNQLLEEIVTEANDIEDYHCADFVTSVYLSEQIQSINEINHYIIKLS 561
           ++AF  +  +E+  N+ L ++ + A +  D H  DF+   YL EQ++SINE    +  L 
Sbjct: 93  LKAFEAALALEKFNNESLLKLHSTAGNHNDAHLTDFIEEKYLDEQVKSINEFARMVANLK 152

Query: 560 SFGDDI 543
             G  +
Sbjct: 153 RVGPGV 158


>AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin
           protein 1 protein.
          Length = 170

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = -1

Query: 743 LIEAFRYSXKMEEQVNQLLEEIVTEANDIEDYHCADFVTSVYLSEQIQSINEINHYIIKL 564
           ++EAF  +  +E   N  L ++   A    D H  +++   YL EQ+ SINE   +I  +
Sbjct: 92  VLEAFEAALALERANNASLLKLHGIAEQRNDAHLTNYIQEKYLEEQVHSINEFARHIANI 151

Query: 563 SSFG 552
              G
Sbjct: 152 KRAG 155


>AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical
           protein K09F6.3 protein.
          Length = 1360

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/73 (28%), Positives = 35/73 (47%)
 Frame = -1

Query: 701 VNQLLEEIVTEANDIEDYHCADFVTSVYLSEQIQSINEINHYIIKLSSFGDDIHAIHNFD 522
           V+  L++++    D E     D  T V L E I S+N +N   ++LSSF     AI    
Sbjct: 667 VDDDLKKLMDAVKDFEKTG-KDAATKVKLKEVIASLNSLNSIGLQLSSFATPFTAIGQSF 725

Query: 521 TSLIKLFPFSNRL 483
           ++L   F  + ++
Sbjct: 726 SALDAFFVSNGKI 738


>Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical
           protein F26D2.10 protein.
          Length = 1213

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
 Frame = -1

Query: 800 EIYQIYGELRNQIYLITXPLIEAFRYSXKMEEQVNQLLEEIVTEANDIEDYHCADFVTSV 621
           E ++I   + N IYL       A +      E +++LL     + N + + +    V S 
Sbjct: 34  EKFRILSRVTNAIYLQAG----AIKNEINARELISELLHMPSNQLNTVVNVNVE--VASS 87

Query: 620 YLSEQIQSINEINHYIIKL--SSFGDDIHAIHNFDTSLIKLFPFSNRLNL 477
            L    Q   ++ H+      SSF DD++AI N   ++I +  FS + +L
Sbjct: 88  ELRRMHQEYTKLIHFFENRTQSSFNDDVNAIFN---NIIFILYFSRKSSL 134


>AF038618-3|AAB92073.1|  572|Caenorhabditis elegans Hypothetical
           protein F42G8.7 protein.
          Length = 572

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/21 (47%), Positives = 18/21 (85%)
 Frame = -1

Query: 716 KMEEQVNQLLEEIVTEANDIE 654
           K+ E++N+L+++IVTE  +IE
Sbjct: 366 KLHEKLNELIQKIVTETEEIE 386


>U29613-4|AAP82648.2|  165|Caenorhabditis elegans Hypothetical
           protein K02A6.3b protein.
          Length = 165

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -1

Query: 740 IEAFRYSXKMEEQVNQLLEEIVTEANDIEDYHCAD---FVTSVYLSEQIQSI 594
           +E  +   KMEE+V+  L EIV+   ++E   C +   + T+V LS   + I
Sbjct: 47  LERMKRGKKMEERVDSALIEIVSRCPNLERLACRERMSYGTAVILSVYAERI 98


>U29613-3|AAC47062.2|  483|Caenorhabditis elegans Hypothetical
           protein K02A6.3a protein.
          Length = 483

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -1

Query: 740 IEAFRYSXKMEEQVNQLLEEIVTEANDIEDYHCAD---FVTSVYLSEQIQSI 594
           +E  +   KMEE+V+  L EIV+   ++E   C +   + T+V LS   + I
Sbjct: 365 LERMKRGKKMEERVDSALIEIVSRCPNLERLACRERMSYGTAVILSVYAERI 416


>AF067617-4|AAC17557.1|  381|Caenorhabditis elegans Hypothetical
           protein T04D1.2 protein.
          Length = 381

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -1

Query: 725 YSXKMEEQVNQLLEEIVTEANDIEDYHCADFVTSVYLSEQIQSINEIN-HYIIKLSSFGD 549
           Y+ K+E+ +N   +EI+   ND++ +    F+   +LS ++ S+  +  H       F D
Sbjct: 264 YNIKIEDLMNNNCKEIILWNNDLQIFEITKFICH-WLSGKLPSLERLRLHMFHDWEIFED 322

Query: 548 DIHAIHN 528
            +  I N
Sbjct: 323 ILIGIDN 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,776,616
Number of Sequences: 27780
Number of extensions: 291181
Number of successful extensions: 700
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)