Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o15
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1087 - 23868787-23869325,23870052-23870181                       29   3.7  
02_04_0058 - 19329380-19330498,19330941-19330988,19331797-19332174     29   4.9  
03_01_0369 - 2863159-2863491,2864149-2864214,2865045-2865140,286...    29   6.5  

>07_03_1087 - 23868787-23869325,23870052-23870181
          Length = 222

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 425 MENDDPDKFIKKGFSGHVPYGFQRFGESSK 336
           M+ D P  +IK    GH PYG  +F   +K
Sbjct: 189 MQVDSPATYIKTRLLGHFPYGSTKFRRKTK 218


>02_04_0058 - 19329380-19330498,19330941-19330988,19331797-19332174
          Length = 514

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 398 IKKGFSGHVPYGFQRFGESSKKLTNSALCDFS 303
           +K+ F  HVP+G    GESS + T  +  DFS
Sbjct: 273 VKRKFLKHVPHGNIDSGESSSQHTGESNLDFS 304


>03_01_0369 -
           2863159-2863491,2864149-2864214,2865045-2865140,
           2865530-2865632,2865771-2865838,2866570-2866712,
           2867050-2867242,2867602-2867640,2867742-2867807,
           2868617-2869651
          Length = 713

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 589 PEKDSPGIWLTDSLLRRSLSCP 524
           P    PG+ LTD LLRR+ +CP
Sbjct: 25  PVASDPGLSLTDLLLRRADACP 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,456,283
Number of Sequences: 37544
Number of extensions: 545625
Number of successful extensions: 1443
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)