Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o15
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92828-5|CAB07332.2|  586|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z72504-4|CAH60755.1|  653|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    29   3.3  
X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.      29   3.3  
AF468834-1|AAL77082.1|  586|Caenorhabditis elegans PRY-1 protein.      29   3.3  
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/...    29   5.8  
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/...    29   5.8  

>Z92828-5|CAB07332.2|  586|Caenorhabditis elegans Hypothetical
           protein C37A5.9 protein.
          Length = 586

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 208 ISTSVCCPTTQVTCQAASSDSEKPTATTRETLSVGSEETS 89
           +S S+C P+      + S DS  P  TTR   + GS ++S
Sbjct: 420 MSQSMCAPSYSSASSSYSRDSFAPAPTTRVNFAPGSSKSS 459


>Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical
           protein C29E6.1a protein.
          Length = 812

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 214 STISTSVCCPTTQVTCQAASSDSEKPTATTRETLSVGSEETSHLRRKEFT 65
           +T+ TS   PTT     A ++ + KPT T  ET +  S  T+   +K  T
Sbjct: 498 TTVQTSTTVPTTPSKTTATTTTTPKPTTT--ETATTSSSTTTVTTQKPTT 545


>Z72504-4|CAH60755.1|  653|Caenorhabditis elegans Hypothetical
           protein C29E6.1b protein.
          Length = 653

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 214 STISTSVCCPTTQVTCQAASSDSEKPTATTRETLSVGSEETSHLRRKEFT 65
           +T+ TS   PTT     A ++ + KPT T  ET +  S  T+   +K  T
Sbjct: 339 TTVQTSTTVPTTPSKTTATTTTTPKPTTT--ETATTSSSTTTVTTQKPTT 386


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = -3

Query: 214 STISTSVCCPTTQVTCQAASSDSEKPTATTRETLSVGSEETSHLRRKEFTS 62
           ST++TS   P+T  T  ++SS +   TA++  + +  S ++S   ++  T+
Sbjct: 487 STVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQSSTSTQQSSTT 537


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = -3

Query: 214 STISTSVCCPTTQVTCQAASSDSEKPTATTRETLSVGSEETSHLRRKEFTS 62
           ST++TS   P+T  T  ++SS +   TA++  + +  S ++S   ++  T+
Sbjct: 487 STVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQSSTSTQQSSTT 537


>X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.
          Length = 693

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 214 STISTSVCCPTTQVTCQAASSDSEKPTATTRETLSVGSEETSHLRRKEFT 65
           +T+ TS   PTT     A ++ + KPT T  ET +  S  T+   +K  T
Sbjct: 379 TTVQTSTTVPTTPSKTTATTTTTPKPTTT--ETATTSSSTTTVTTQKPTT 426


>AF468834-1|AAL77082.1|  586|Caenorhabditis elegans PRY-1 protein.
          Length = 586

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 208 ISTSVCCPTTQVTCQAASSDSEKPTATTRETLSVGSEETS 89
           +S S+C P+      + S DS  P  TTR   + GS ++S
Sbjct: 420 MSQSMCAPSYSSASSSYSRDSFAPAPTTRVNFAPGSSKSS 459


>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           c protein.
          Length = 1510

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = -1

Query: 819 PSSTERDRHRERTFP*WRSRLQASHDTRIRRISAPSERTLRPKIYRVSYGSTLR 658
           P S  R +   R F  W S  ++  DTR RR      R+   K    S  ST R
Sbjct: 483 PKSPNRSKKDSRAFG-WDSTDESDEDTRRRRSGRSQNRSSERKFQTTSSSSTRR 535


>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           a protein.
          Length = 1507

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = -1

Query: 819 PSSTERDRHRERTFP*WRSRLQASHDTRIRRISAPSERTLRPKIYRVSYGSTLR 658
           P S  R +   R F  W S  ++  DTR RR      R+   K    S  ST R
Sbjct: 483 PKSPNRSKKDSRAFG-WDSTDESDEDTRRRRSGRSQNRSSERKFQTTSSSSTRR 535


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,509,349
Number of Sequences: 27780
Number of extensions: 454317
Number of successful extensions: 1399
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1398
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)