Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o15
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    27   0.23 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.92 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   8.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   8.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   8.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   8.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   8.5  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        22   8.5  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 190 CPTTQVTCQAASSDSEKPTATTRETLSVGSEETSHLRR 77
           C T  VTC   S ++E P++T++++  V S + S + R
Sbjct: 261 CVTNSVTCDRPSDEAE-PSSTSKKSGIVRSHQQSCINR 297


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 631 GQLGTNWRGSSVFRPEKDSP 572
           G++G   R +S F PE+D+P
Sbjct: 543 GRVGNRGRATSFFDPEEDAP 562


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 547 AENLSTKSQGCPFPA*RLTTLSSWFLA 627
           +EN +T ++ C      L T+S WF+A
Sbjct: 265 SENQNTSAE-CKLAKVALMTISLWFMA 290


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 503 CAGILRDLPMDEPKLSPASHSVS 435
           C G L   P D+P  S A  S+S
Sbjct: 186 CQGRLNIFPFDDPLCSFAIESIS 208


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 503 CAGILRDLPMDEPKLSPASHSVS 435
           C G L   P D+P  S A  S+S
Sbjct: 186 CQGRLNIFPFDDPLCSFAIESIS 208


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 503 CAGILRDLPMDEPKLSPASHSVS 435
           C G L   P D+P  S A  S+S
Sbjct: 237 CQGRLNIFPFDDPLCSFAIESIS 259


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 503 CAGILRDLPMDEPKLSPASHSVS 435
           C G L   P D+P  S A  S+S
Sbjct: 186 CQGRLNIFPFDDPLCSFAIESIS 208


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 547 AENLSTKSQGCPFPA*RLTTLSSWFLA 627
           +EN +T ++ C      L T+S WF+A
Sbjct: 15  SENQNTSAE-CKLAKVALMTISLWFMA 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,652
Number of Sequences: 438
Number of extensions: 5832
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)