Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o14
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    33   0.027
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    27   1.8  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    27   2.4  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    26   4.2  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   5.5  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   9.6  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    25   9.6  

>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 33.1 bits (72), Expect = 0.027
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 273 KMRPEEIESISKRLENGEISEDNSTDNEDDINYY 374
           K   +++E I +RLEN +IS +   D ++DI YY
Sbjct: 166 KWHQDKLELIMRRLENSQISPEAVNDIQEDIMYY 199


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = -2

Query: 429 NYLYPLHLLAPSDDLFGSNNSLCHLHCR*NCLPKFHHFLTALICSQSLL 283
           NYL     L  +  LF     L  LHC       +HH +TAL+C   LL
Sbjct: 140 NYLTKYLELMDTVFLFLKKKPLAFLHC-------YHHGITALLCFTQLL 181


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 306 KRLENGEISEDNSTDNEDDINYYSS 380
           +R  +   S D++ DNE+D +YYS+
Sbjct: 3   RRARSIRFSSDDNEDNEEDDDYYSN 27


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 270 SKMRPEEIESISKRLENGEISEDN 341
           SK + EE ES     E+GEISED+
Sbjct: 17  SKKKNEEDESNDSDKEDGEISEDD 40


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 291  IESISKRLENGEISEDNSTDNEDDI 365
            ++S+SK  EN   +EDNS +  +DI
Sbjct: 1486 VDSMSKERENVSSNEDNSPEAFEDI 1510


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 288 EIESISKRLENGEISEDNSTDNEDDIN 368
           E+E+I K LEN +  +  STD   + N
Sbjct: 676 EMEAIRKELENSKYQQQLSTDRLTNAN 702


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 411 HLLAPSDDLFGSNNS 367
           HLLA  DD+F SN+S
Sbjct: 612 HLLALRDDIFNSNDS 626


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,887,424
Number of Sequences: 5004
Number of extensions: 33281
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)