Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10o10
(443 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 25 0.49
DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 25 0.49
DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 25 0.49
DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 25 0.49
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 24 0.86
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 24 0.86
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 24 0.86
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 24 0.86
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 24 0.86
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 24 0.86
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 24 0.86
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 24 0.86
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 24 0.86
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 24 0.86
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 24 0.86
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 23 1.5
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 23 1.5
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 23 1.5
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 23 2.0
DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex det... 22 3.5
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 22 3.5
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 22 3.5
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 22 3.5
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 22 3.5
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 3.5
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 3.5
DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex det... 21 4.6
DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex det... 21 4.6
DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex det... 21 4.6
DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex det... 21 4.6
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 21 4.6
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 21 4.6
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 21 6.1
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 21 6.1
>DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 24.6 bits (51), Expect = 0.49
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 2 NIKKYTKNT*FNLNYVNITFIRRIPV 79
N Y N L Y NI +I +IP+
Sbjct: 98 NNNNYNNNNYKKLQYYNINYIEQIPI 123
>DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 24.6 bits (51), Expect = 0.49
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 2 NIKKYTKNT*FNLNYVNITFIRRIPV 79
N Y N L Y NI +I +IP+
Sbjct: 98 NNNNYNNNNYKKLQYYNINYIEQIPI 123
>DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 24.6 bits (51), Expect = 0.49
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 2 NIKKYTKNT*FNLNYVNITFIRRIPV 79
N Y N L Y NI +I +IP+
Sbjct: 98 NNNNYNNNNYKKLQYYNINYIEQIPI 123
>DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 24.6 bits (51), Expect = 0.49
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 2 NIKKYTKNT*FNLNYVNITFIRRIPV 79
N Y N L Y NI +I +IP+
Sbjct: 98 NNNNYNNNNYKKLQYYNINYIEQIPI 123
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.8 bits (49), Expect = 0.86
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 2 NIKKYTKNT*FNLNYVNITFIRRIPV 79
N Y K+ +N Y NI +I +IP+
Sbjct: 97 NYNNYNKHN-YNKLYYNINYIEQIPI 121
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.8 bits (49), Expect = 0.86
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 2 NIKKYTKNT*FNLNYVNITFIRRIPV 79
N Y K+ +N Y NI +I +IP+
Sbjct: 97 NYNNYNKHN-YNKLYYNINYIEQIPI 121
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.8 bits (49), Expect = 0.86
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 2 NIKKYTKNT*FNLNYVNITFIRRIPV 79
N Y K+ +N Y NI +I +IP+
Sbjct: 97 NYNNYNKHN-YNKLYYNINYIEQIPI 121
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.8 bits (49), Expect = 0.86
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 2 NIKKYTKNT*FNLNYVNITFIRRIPV 79
N Y K+ +N Y NI +I +IP+
Sbjct: 97 NYNNYNKHN-YNKLYYNINYIEQIPI 121
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.8 bits (49), Expect = 0.86
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 2 NIKKYTKNT*FNLNYVNITFIRRIPV 79
N Y K+ +N Y NI +I +IP+
Sbjct: 97 NYNNYNKHN-YNKLYYNINYIEQIPI 121
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.8 bits (49), Expect = 0.86
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 2 NIKKYTKNT*FNLNYVNITFIRRIPV 79
N Y K+ +N Y NI +I +IP+
Sbjct: 97 NYNNYNKHN-YNKLYYNINYIEQIPI 121
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.8 bits (49), Expect = 0.86
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 2 NIKKYTKNT*FNLNYVNITFIRRIPV 79
N Y K+ +N Y NI +I +IP+
Sbjct: 97 NYNNYNKHN-YNKLYYNINYIEQIPI 121
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.8 bits (49), Expect = 0.86
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 2 NIKKYTKNT*FNLNYVNITFIRRIPV 79
N Y K+ +N Y NI +I +IP+
Sbjct: 97 NYNNYNKHN-YNKLYYNINYIEQIPI 121
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.8 bits (49), Expect = 0.86
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 2 NIKKYTKNT*FNLNYVNITFIRRIPV 79
N Y K+ +N Y NI +I +IP+
Sbjct: 97 NYNNYNKHN-YNKLYYNINYIEQIPI 121
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 23.8 bits (49), Expect = 0.86
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 2 NIKKYTKNT*FNLNYVNITFIRRIPV 79
N Y K+ +N Y NI +I +IP+
Sbjct: 330 NYNNYNKHN-YNKLYYNINYIEQIPI 354
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 23.8 bits (49), Expect = 0.86
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 2 NIKKYTKNT*FNLNYVNITFIRRIPV 79
N Y K+ +N Y NI +I +IP+
Sbjct: 330 NYNNYNKHN-YNKLYYNINYIEQIPI 354
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 23.0 bits (47), Expect = 1.5
Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -1
Query: 314 AYSCVNINNFQRAVG-AWKLSRTRTMPAAGTTAIDAYMAQREELHQPIFIQVEQNENC 144
+++ +I+ Q A+ WK + T+++AY+ + + + PI + N +C
Sbjct: 201 SFAIESISYEQTAITYVWKNDEGTLRKSPSLTSLNAYLIKNQTITCPIKVSWRGNYSC 258
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 23.0 bits (47), Expect = 1.5
Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -1
Query: 314 AYSCVNINNFQRAVG-AWKLSRTRTMPAAGTTAIDAYMAQREELHQPIFIQVEQNENC 144
+++ +I+ Q A+ WK + T+++AY+ + + + PI + N +C
Sbjct: 252 SFAIESISYEQTAITYVWKNDEGTLRKSPSLTSLNAYLIKNQTITCPIKVSWRGNYSC 309
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 23.0 bits (47), Expect = 1.5
Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -1
Query: 314 AYSCVNINNFQRAVG-AWKLSRTRTMPAAGTTAIDAYMAQREELHQPIFIQVEQNENC 144
+++ +I+ Q A+ WK + T+++AY+ + + + PI + N +C
Sbjct: 201 SFAIESISYEQTAITYVWKNDEGTLRKSPSLTSLNAYLIKNQTITCPIKVSWRGNYSC 258
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 22.6 bits (46), Expect = 2.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -1
Query: 149 NCEEPNSAFLARSSILVMIVCVILQV 72
N E+P F+A +++V +V IL +
Sbjct: 1573 NDEDPMKIFMANLNLVVPVVAAILVI 1598
>DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.8 bits (44), Expect = 3.5
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 2 NIKKYTKNT*FNLNYVNITFIRRIPV 79
N KY N Y NI +I +IP+
Sbjct: 94 NNYKYNYNNNCKKLYYNINYIEQIPI 119
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 21.8 bits (44), Expect = 3.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 14 YTKNT*FNLNYVNITFIRRIPV 79
+ N L Y NI +I +IPV
Sbjct: 313 HNNNNYKKLQYYNINYIEQIPV 334
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.8 bits (44), Expect = 3.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 14 YTKNT*FNLNYVNITFIRRIPV 79
+ N L Y NI +I +IPV
Sbjct: 324 HNNNNYKKLQYYNINYIEQIPV 345
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.8 bits (44), Expect = 3.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 14 YTKNT*FNLNYVNITFIRRIPV 79
+ N L Y NI +I +IPV
Sbjct: 324 HNNNNYKKLQYYNINYIEQIPV 345
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 21.8 bits (44), Expect = 3.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 14 YTKNT*FNLNYVNITFIRRIPV 79
+ N L Y NI +I +IPV
Sbjct: 313 HNNNNYKKLQYYNINYIEQIPV 334
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.8 bits (44), Expect = 3.5
Identities = 8/26 (30%), Positives = 13/26 (50%)
Frame = -2
Query: 265 GNSVEPEQCLQQEQRLSTLTWHKEKN 188
GN CL +RL L W ++++
Sbjct: 140 GNPWNTRYCLTPTERLEALCWTQDED 165
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.8 bits (44), Expect = 3.5
Identities = 8/26 (30%), Positives = 13/26 (50%)
Frame = -2
Query: 265 GNSVEPEQCLQQEQRLSTLTWHKEKN 188
GN CL +RL L W ++++
Sbjct: 193 GNPWNTRYCLTPTERLEALCWTQDED 218
>DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.4 bits (43), Expect = 4.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 38 LNYVNITFIRRIPV 79
L Y NI +I +IPV
Sbjct: 100 LQYYNINYIEQIPV 113
>DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.4 bits (43), Expect = 4.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 38 LNYVNITFIRRIPV 79
L Y NI +I +IPV
Sbjct: 100 LQYYNINYIEQIPV 113
>DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex
determiner protein.
Length = 176
Score = 21.4 bits (43), Expect = 4.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 38 LNYVNITFIRRIPV 79
L Y NI +I +IPV
Sbjct: 100 LQYYNINYIEQIPV 113
>DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.4 bits (43), Expect = 4.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 38 LNYVNITFIRRIPV 79
L Y NI +I +IPV
Sbjct: 100 LQYYNINYIEQIPV 113
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 21.4 bits (43), Expect = 4.6
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +2
Query: 14 YTKNT*FNLNYVNITFIRRIPV 79
Y N + Y NI +I +IP+
Sbjct: 317 YYNNNNYKKLYYNINYIEQIPI 338
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 21.4 bits (43), Expect = 4.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 38 LNYVNITFIRRIPV 79
L Y NI +I +IPV
Sbjct: 333 LQYYNINYIEQIPV 346
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.0 bits (42), Expect = 6.1
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 2 NIKKYTKNT*FNLNYVNITFIRRIPV 79
N K Y N Y NI I +IPV
Sbjct: 310 NYKNYNNNYNSKKLYYNIINIEQIPV 335
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.0 bits (42), Expect = 6.1
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 2 NIKKYTKNT*FNLNYVNITFIRRIPV 79
N K Y N Y NI I +IPV
Sbjct: 321 NYKNYNNNYNSKKLYYNIINIEQIPV 346
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,275
Number of Sequences: 438
Number of extensions: 2293
Number of successful extensions: 34
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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