Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10o08
         (819 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           26   0.41 
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    25   0.55 
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    25   0.72 
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    25   0.72 
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       25   0.96 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.9  

>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
 Frame = -3

Query: 253 PNMLAY-IESMSISRNAS-KKVRTSRTLSNGRRNYLKSWLLEKNTFERSSRSSKRPGTLS 80
           PN +A   ES S   N    KV T R      R+      L+++T   S+ S   P T  
Sbjct: 80  PNFIAAAFESNSRGGNKKLSKVETLRMAVEYIRSLEDLLALDESTVSSSTSSIPSPSTTD 139

Query: 79  SRSGRPRPLQKXGYRHSTFK-LNVGD 5
             S  P P     Y+   ++ LNV D
Sbjct: 140 DLSTNPTPPPHYTYQIIPYEALNVDD 165


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 710 NTKRPNIPFIVSKSTAPSHNIGVNIQQVLNGLKVQQPLSG 591
           NT    IPF V ++  P  N+ V+++  +    +Q P +G
Sbjct: 648 NTSIIKIPFDVFRNMLPVRNVSVDVRDNILLKNLQNPSTG 687


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 452 SYKYMSYNRLLNLYREGDGIVPRFLKAINRPHYFYTSMYN 333
           S+KY +Y+ + +L+R G  I    L     P+Y+    Y+
Sbjct: 226 SHKYTNYSAVQDLHRRGHEIAVFSLTHKEDPNYWSQGSYD 265


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 452 SYKYMSYNRLLNLYREGDGIVPRFLKAINRPHYFYTSMYN 333
           S+KY +Y+ + +L+R G  I    L     P+Y+    Y+
Sbjct: 233 SHKYTNYSAVQDLHRRGHEIAVFSLTHKEDPNYWSQGSYD 272


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 495 FTIVQRRLRSCTSCTVSGNVTQPH 566
           +  +++RLRSC  C  + +  +PH
Sbjct: 162 YRTIKKRLRSCDLCQKTKSSNRPH 185


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 755 VASQMKQAGVRYYCENTKRPNIPFIVS 675
           + SQ+K+   R YC      N+ F+VS
Sbjct: 86  MTSQIKKNVTRAYCNKKIDRNLQFVVS 112


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 755 VASQMKQAGVRYYCENTKRPNIPFIVS 675
           + SQ+K+   R YC      N+ F+VS
Sbjct: 86  MTSQIKKNVTRAYCNKKIDRNLQFVVS 112


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,341
Number of Sequences: 336
Number of extensions: 4297
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22414104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)