Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10o08
(819 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 30 0.45
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 29 0.60
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 0.60
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 29 1.0
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 28 1.8
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 27 2.4
SPAC824.03c |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.2
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 27 3.2
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 27 4.2
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 26 7.4
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 26 7.4
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 26 7.4
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 25 9.8
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 9.8
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb... 25 9.8
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 29.9 bits (64), Expect = 0.45
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = -1
Query: 480 TGTSYVASTLLQIHVIQ*TLEFISRGRRYRSEVLESDQPTALLLHFDVQP---DRRSG*F 310
TGT LL I E RRYR + +E+ T +L H DV P + S F
Sbjct: 278 TGTYTTIIPLLIFISIAILREGFDNYRRYRQDRVENRIQTQVLRHVDVDPPIVEEHSSFF 337
Query: 309 *WRHI*GAWRKSGSKTESSR 250
R WR+S S+ +SR
Sbjct: 338 RRRR----WRRSRSQESASR 353
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 29.5 bits (63), Expect = 0.60
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = -2
Query: 203 KEGPYQPHLEQRKEELSKELASREEHIR-KVVKEFKASGDSEQPLRASASTTEXRVQALN 27
++ P + H EE+ K+ E R + KEF+ S ++ + AS +TTE +VQ+
Sbjct: 282 QDRPDKRHGTYSLEEIDKQRKEFENRQRLQKEKEFQKSREAALKIHASRNTTETQVQSAR 341
Query: 26 IQIKRRR 6
+ +R+
Sbjct: 342 ERYLQRK 348
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 29.5 bits (63), Expect = 0.60
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -2
Query: 182 HLEQRKEELSKELASREEHIRKVVKEFKASGDSEQPLRASASTTEXRV 39
HL+Q +KEL S+ + KE ++ DS L+ SAS+ ++
Sbjct: 1434 HLKQELTNKNKELTSKNAENEAMQKEIESLKDSNHQLQESASSDAEQI 1481
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 28.7 bits (61), Expect = 1.0
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Frame = -2
Query: 323 DRDDFDGATSKGRGGSQEAKQSLAEYASLYREYEHIEK-CIK-EGPYQPHLEQRKEELSK 150
D D +D A ++G + K+S+ E E I + IK E Y+P LEQ
Sbjct: 433 DVDVYDTAENEGNNTLLQIKESVHEKTPTQDEPMDISQDTIKQEDYYEPKLEQHSSSKRN 492
Query: 149 ELASR-EEHIRKVVKEFKASGDSEQPLRASA 60
+++R EE + A G S + SA
Sbjct: 493 SISTRKEEDAASALANLSAVGRSISAVDESA 523
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -2
Query: 461 RLPSYKYMSYNRLLNLYREGDGIVPRFL 378
RL S ++SYN +LNL R +GI P F+
Sbjct: 626 RLDSAFHLSYNMILNLLRV-EGISPEFM 652
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 233 REYEHIEKCIKEGPYQPHLEQRKEELSKELASREE 129
+E H E IKE QPHL + + EL + SR+E
Sbjct: 737 KEIGHYESLIKEK--QPHLSELEMELRNFVKSRDE 769
>SPAC824.03c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = -3
Query: 292 RGVEEVRKQNRV*PNMLAYIESMSISRNASKKVRTSRTLSNGRR-NYLKSWLLEKNTFER 116
RG+ +R + N+++Y+E +S+ +K TS T++ G YL ++L++++F+
Sbjct: 19 RGLLGLRNLSVTHNNLVSYLEHLSV-----QKPSTSNTVAQGTLFEYLVQYVLKQHSFQL 73
Query: 115 SSRSSKRPG 89
K G
Sbjct: 74 ERCGGKGDG 82
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 27.1 bits (57), Expect = 3.2
Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Frame = -2
Query: 308 DGATSKG-RGGSQEAKQSLAEYASLYREY-EHIEKCIKEGPYQPHLEQRKEELSKELASR 135
DG S R G + KQ++ AS + E K + P ++ KEE ++L
Sbjct: 170 DGKKSDNLRNGVNKVKQNMRNGASARDQAREQGSKAKDKIKNDPDAQKAKEETKQKLQDL 229
Query: 134 EEHIRKVVKEFKASGDSEQPLRASASTTEXRVQALNIQ 21
E + V + + + P+R+ + + + L+ Q
Sbjct: 230 YEEFKSVAVDLQGDPKYQHPVRSLLNLIDKFIDKLSEQ 267
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -2
Query: 224 EHIEKCIKEGPYQPHLEQRKEELSKE---LASREEHIRKVVKEFKASGDSE 81
E++E I Y+P +E+ +ELS A +E ++ V+ E DS+
Sbjct: 290 EYLEDIIGTSKYKPIIEENMQELSNSDDICAEKESRLKLVLSEKAKLEDSK 340
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2
Query: 275 QEAKQSLAEYASLYREYEHIEK 210
+E ++S EYASLY+EY E+
Sbjct: 327 REKQRSKDEYASLYKEYTRKEQ 348
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = -2
Query: 623 NGLKVQQPLSGIPSTIAHHMGLGHVSTYGTRSATAQPS 510
+G K P+ G PST G S +G QPS
Sbjct: 509 SGAKSNTPVFGQPSTFGQAPVFGQPSAFGQAPVFGQPS 546
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.8 bits (54), Expect = 7.4
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = -2
Query: 275 QEAKQSLAEYAS--LYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKVVKEF 102
++ K+ +Y S L + E +EK E + L KEE KELA + E + +
Sbjct: 1061 KKQKEFANQYDSTLLAQAQEKLEKLKVEVERRRRLLSEKEERRKELAIKIEQVTNSCSDL 1120
Query: 101 KASGDSEQPLRA 66
+ ++EQ A
Sbjct: 1121 ELRTNAEQDFYA 1132
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.4 bits (53), Expect = 9.8
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Frame = -2
Query: 725 RYYCENTKRPNIPFIV--SKSTAPSHNIGVNIQQV---LNGLKVQQPLSGIPSTIAHHMG 561
R YC P F S A ++G++ + L +++ SG P + H
Sbjct: 1752 RKYCFAAPNPQASFAGRWSAKEAVFKSLGISGKGAAAPLKDIEIISSESGAPEVVLHGEA 1811
Query: 560 LGHVSTYGTRSATAQPSLDNREINVIKLGHR 468
+T G +S + S D+ + + L H+
Sbjct: 1812 AKAATTAGVKSVSVSISHDDNQSVSVALAHK 1842
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 25.4 bits (53), Expect = 9.8
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Frame = -2
Query: 368 NRPHYFYTSMYNLTADRDDFDGATSKGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPY 189
NRP F + T+D + + + + ++ R++E K I
Sbjct: 320 NRPKKFASHKSPTTSDSSNVESSEDVDPASLLQNEEFHKLIEERQRQHEERLKRINANKK 379
Query: 188 Q-PHLEQRKEELSKELASREEHIRKVVKEFKASGD 87
L Q+K EL+++ +E + + +KE SG+
Sbjct: 380 ALEELNQKKRELAQQQLKEQELLMQKIKETDRSGN 414
>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 9.8
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = -3
Query: 283 EEVRKQNR----V*PNMLAYIESMSISRNASKKVRTS-RTLSNGRRNYLKSWLLEKNTFE 119
EE+RK+ + P M + S + + + K++ + R L NY+K+W L K+ F+
Sbjct: 98 EELRKREQYDELAKPIMSKGLRSRTEQQESIGKLQDAIRELEEENANYVKAWNLRKDIFD 157
Query: 118 RS 113
+
Sbjct: 158 ET 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,344,627
Number of Sequences: 5004
Number of extensions: 70960
Number of successful extensions: 248
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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